Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq10 102 7e-17 seq4 102 7e-17 seq67 86.0 6e-12 >seq10 Length=322828 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| ||||| | || || || ||||| || || ||||| || || || || ||| Sbjct 156340 CCTCCACGGAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAC 156399 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || ||| || | || ||||| || | || | ||| |||||||| || ||| Sbjct 156400 AAAGTGCGGCCATCCTCGAGCTGCTTTCCAGCAAAGATGAGTCGCTGCTGGTCAGGTGGA 156459 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 |||||||| || || ||||| || |||| || | || | |||||| || || ||||| Sbjct 156460 ATGCCTTCCTTGTCCTGAATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGACGATTCGAC 156518 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| | ||| |||||||| | || || ||||| || ||||| Sbjct 156519 CTCGAGAGTGATCGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 156566 >seq4 Length=437454 Score = 102 bits (112), Expect = 7e-17 Identities = 405/633 (64%), Gaps = 11/633 (2%) Strand=Plus/Plus Query 122889 ATCGAGGAAAAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTG 122948 ||| | | ||||||||| || ||| |||||| ||||||||||| |||||| | ||| | Sbjct 48185 ATCAACGGAAAGGTCGCTGAGCGTCCTCAACACATGCTCATGCGTGTCGCTGTTGGCATC 48244 Query 122949 CACGGACGCGACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTC 123008 ||||| | |||||||| | ||| | ||| |||||| || | ||||| || |||| || Sbjct 48245 CACGGTCAAGACATCGAGAGCGCCATCGAGACTTACAATCTCATGTCCCAGAAATACTTT 48304 Query 123009 ACGCACGCGAGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGT 123068 || ||||| ||||| | ||| ||| || || || ||| | || ||||| Sbjct 48305 ACCCACGCCTCGCCCACCCTCTTCAACGCTGGTACACCACACCCACAGCTCTCGTCGTGC 48364 Query 123069 TTTTTGCTCACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGA-TTG 123127 || || ||||| || || ||| ||| ||| ||||| || || | | || || Sbjct 48365 TTCCTGGTCACCATGAAGGACGACTCGATCGACGGCATCTACGACACGCT-CAAGACGTG 48423 Query 123128 CGCGTTGATTTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCG 123187 || |||| ||||| | ||| || || || | ||| | ||| | | | || Sbjct 48424 TGCCATGATCTCCAAGACCGCCGGTGGTATCGGTCTCAACATCCACTGCATTCGCGGTAC 48483 Query 123188 CGGAAGCCGCATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGT 123247 ||| |||| ||||| |||| || ||| ||| | ||||||| || || Sbjct 48484 CGGCTCGTACATCGCCGGCACCAACGGTGTCAGTAACGGTATCGTACCCATGCTCCGCGT 48543 Query 123248 TTACAATAACGCCGTGCGGCACGTCGACCAGGGCGG---CAAACGCAAAGGCGCGATGGC 123304 | || ||| | | || ||||||||||||| || ||| || || || | || Sbjct 48544 CTTTAACAACACTGCCCGCTACGTCGACCAGGGTGGCAACAAGCGTCCGGGTGCCTTTGC 48603 Query 123305 GATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTT---AAAACGCAA 123361 ||||| | || || |||||| ||||| | || || | || | ||| || Sbjct 48604 CATCTACATTGAGCCATGGCACTCGGATGTCTTTGAGTTCCTCGATCTCCGCAAA---AA 48660 Query 123362 CATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTT 123421 | || |||||| | | ||||| || | || ||||| | ||||| |||||| | Sbjct 48661 CCACGGCAAGGAAGAGATGCGTGCCCGTGAGCTCTTCTACGCCCTCTGGGTCCCCGATCT 48720 Query 123422 GTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCC 123481 || ||| | || | | |||||| |||||||||||||| ||| | ||| || Sbjct 48721 CTTCATGAAGAGGGTCGAGCAGAACGGCGACTGGTCGCTCATGTGCCCCAACGAGTGCCC 48780 Query 123482 CGGCTTGAGCGACGTTTACGGCAATCAGTTTGA 123514 || | |||| |||||| | ||||||| Sbjct 48781 AGGTCTCGCCGACTGCTACGGCGACGAGTTTGA 48813 >seq67 Length=99859 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || | ||| || || |||||||| ||||| || || || Sbjct 38317 ATACCACCACGGAGACGGAGGACCAAATGGAGGGTCGATTCCTTCTGGATGTTGTAGTCC 38376 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| || || | || ||||| ||| | || | |||||||| || || Sbjct 38377 GAGAGGGTACGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATGAGGCGTTGCTGATCGGGA 38436 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 |||||||| || || || || || || |||| || | || | |||||||||||||| Sbjct 38437 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATCGTGTCGGAAGACTC 38495 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || | || || || || ||||| || ||||| || ||||| Sbjct 38496 TACCTCGAGGGTGATGGTCTTACCAGTCAGAGTCTTGACAAAGATCTGCAT 38546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451969683962720