Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq4 232 8e-56 seq21 145 9e-30 seq62 102 1e-16 >seq4 Length=437454 Score = 232 bits (256), Expect = 8e-56 Identities = 921/1424 (65%), Gaps = 39/1424 (3%) Strand=Plus/Minus Query 115876 AACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCA 115935 |||||||| ||||| || | | |||||||||| ||||| ||||| |||||||| Sbjct 49614 AACTCACCGGCGAGCACACGACGCGAGTAGATGTTGGAGGTGTAAGGCTCGAAGCACTCG 49555 Query 115936 TTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTG 115995 ||| ||||||||| || || ||||| || ||||| || || | | || |||| Sbjct 49554 TTGAAACCCAAGATCTGACTGGTCGAGGCAGTAGGCATAGGAGCGAGCAAGAGCGAGTTG 49495 Query 115996 CGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTC 116055 || ||||| | || ||||||| | ||||||| || | | | | Sbjct 49494 CGAAGACCGTGCTTGGCGATCTTAGCCTTGAGCTCTGCCCAGTCCCAGAGGTCCGAAGGC 49435 Query 116056 TCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTC 116115 | ||||||| || |||| || ||| || || || ||||| || | | ||| Sbjct 49434 GTGACGCCCCACATGTCGTACTGCAGCTCACCCTGCGAGGCAGGCGAGCCAGCGTAGGTC 49375 Query 116116 TCATATGGGCCCTCAACCTCCGCCAATTCGGA-GCTCGCCTCGAGGGCTGCGTGATACAT 116174 || || | ||| | ||| |||| ||| | | ||| |||||||| ||||| || || Sbjct 49374 TCGTAGGTGCCGTGCTCCTGAGCCAGCTCGCACGATCGT-TCGAGGGCAGCGTGGTAGAT 49316 Query 116175 TGTCTCAAAAATGCGAGCATTCATTGCCTTG-GCCTCGTCGGAATCAAACGCG-AGACGG 116232 |||||||| || | | || | || | |||||| || ||||| ||| || | Sbjct 49315 GGTCTCAAAGATCTGTACGTTGAG-GCGACGAGCCTCGGGCGACTCAAAGGCGTAGCC-- 49259 Query 116233 CACAAA-ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCAT 116291 || | || || | || ||||||||||||||||||| ||||| ||||| || | ||| Sbjct 49258 CATGATCATGAAGGCGTCGGCGAGACCTTGGACACCGATACCAATGGGGCGGTGGCGCAT 49199 Query 116292 ATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATT 116351 || || | || || ||| || ||||| | || | || || | | | || ||||| Sbjct 49198 GTTGGATCTGCGGGCCTCCTCGACAGGATAGTAGTTGATGTCAATGATCTTGTTGAGATT 49139 Query 116352 TTTGGTGACAACCTTTGTGA---TTTCATGAAGCTTT---TCGTAATCAAAACTGCGAGT 116405 ||| || |||| | || | | | || |||| ||||| | |||| Sbjct 49138 CTTGCAGATGGCCTTGGCGACGCTGTGAAGACGCTTGAAGTCGTA--CGTTTTGGCGA-- 49083 Query 116406 CTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATC 116465 | | || | | | || ||||||||||| ||||| || || || | ||| || Sbjct 49082 --CAGGGTCGATAAAGGTGGGCAGGGCGATTGAGGCCAGGTTGCAGACGGCAACCTCGTC 49025 Query 116466 CTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTT 116525 | ||||||| || || || || ||||| || || | ||| |||||||| | ||| Sbjct 49024 GGGGGCGCTGTACTCGATGATCTCGGTGCACAAGTTGGAGCACTTGATGGTGCCGAGGTT 48965 Query 116526 CTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTC 116585 ||| || || ||| ||| || ||||||||||| || | || | || ||||| Sbjct 48964 CTTCTGGTTGCTCTTGCGGTTGGCAGCGTCCTTGTAGAGGATGAAGGGGTTGCCGGTCTC 48905 Query 116586 CGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTC 116644 || ||| ||| ||| || || | ||| | | || ||| || | || || |||| | Sbjct 48904 GGTCTGGCACTCGAGGATGGCGTACCAGAGCTTCTGCGCCTTG-ACGGTTCGCTTGGAGC 48846 Query 116645 GCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAG 116703 | ||||| ||||||| ||||||| ||||||||| || || ||| || | | Sbjct 48845 GACCCTCGGCCTCGTAGCGCTCGTAGAGGCGCTCAAACTCGTC-GCCGTAGCAGTCGGCG 48787 Query 116704 AGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTC 116763 || ||||| || | || || | ||| ||||| | || || ||| |||| |||| Sbjct 48786 AGACCTGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTCGACCCTCTTC 48727 Query 116764 ATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCC 116823 |||||||| || |||| |||||| || ||||||| || || || ||||| | Sbjct 48726 ATGAAGAGATCGGGGACCCAGAGGGCGTAGAAGAGCTCACGGGCACGCATCTCTTCCTTG 48667 Query 116824 CCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTAC 116883 || || || || | || | || || | || ||||| |||||| || || | ||| Sbjct 48666 CCGTGGTTTTTGCGGAGATCGAGGAACTCAAAGACATCCGAGTGCCATGGCTCAATGTAG 48607 Query 116884 ACCGCGATTG-ACCC-----CTTGCGACGACCAGCCTGGTTTACATACCTCGCCGTTGCG 116937 | || | | |||| |||| ||| |||||| || || | || || | Sbjct 48606 ATGGCAAAGGCACCCGGACGCTTG---TTGCCACCCTGGTCGACGTAGCGGGCAGTGTTG 48550 Query 116938 TTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGT-CCCCCGA-ATAC 116995 ||||| ||||| ||||| || | |||||| | | || || || || ||| ||| Sbjct 48549 TTAAAGACGCGGAGCATGGGTACGATACCGTTACTGACACCGTTGGTGCCGGCGATGTAC 48490 Query 116996 GAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGA 117055 ||| | | | | | | |||||||| | ||| ||||| || || ||| |||| Sbjct 48489 GAGCC--GGTACCGCGAATGCAGTGGATGTTGAGACCGATACCACCGGCGGTCTTGGAGA 48432 Query 117056 TTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGA 117115 | || ||| | |||| || ||||||| || ||||||||||| |||| | | || Sbjct 48431 TCATGGCACACGTCTTGAGCGTGTCGTAGATGCCGTCGATCGAGTCGTCCTTCATGGTGA 48372 Query 117116 TGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCG 117175 |||||||| ||| | ||||| |||||||||||||||||||||||| || | | Sbjct 48371 CCAGGAAGCACGACGAGAGCTGTGGGTGTGGTGTACCAGCGTTGAAGAGGGTGGGCGAGG 48312 Query 117176 CGTGGATGAA-CATACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCT 117234 ||||| | || || | |||||||| || ||| ||||| | | | |||||| Sbjct 48311 CGTGGGTAAAGTATTTC-TGGGACATGAGATTGTAAGTCTCGATGGCGCTCTCGATGTCT 48253 Query 117235 TCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGG 117278 | ||||| || || | | ||| ||||| | ||||| ||| || Sbjct 48252 TGACCGTGGATGCCAACAGCGACACGCATGAGCATGTGTTGAGG 48209 >seq21 Length=224232 Score = 145 bits (160), Expect = 9e-30 Identities = 128/160 (80%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| ||||||||||||||||||||||| || || |||||| ||||| Sbjct 32412 GCAAAGTCGGTGTGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGACCG 32471 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||||||||| |||||||| | |||||| || | ||| ||||| ||||||||||| Sbjct 32472 GGCATGAGACCACGCTTCTTGAGCCAGAAGATGGATGCAAAGGAGCCCGAGAAGAAGATG 32531 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGG 127679 ||||| || ||||| |||| |||||||||||||||| Sbjct 32532 CCCTCGACGGCGGCGAAAGCAACGAGACGCTCGGCAAAGG 32571 >seq62 Length=112892 Score = 102 bits (112), Expect = 1e-16 Identities = 254/383 (66%), Gaps = 12/383 (3%) Strand=Plus/Plus Query 176597 TTGAGGAGGGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTGTGAA 176656 ||||| | || || | |||| || || | |||| |||||||||||| ||||| ||| Sbjct 20020 TTGAGCAACGAGGGGTAAAAGTGGTCGAGGAAGTTGATGATGAGACCCTTGATGTGCGAA 20079 Query 176657 CCATCGTTATCCGCATCCGTCATAATCATGAGCCGACCATAGCGAAGCTCGGAAACATCT 176716 || |||| |||| ||| ||||| ||||||| | || || || || | || || Sbjct 20080 CCGTCGTGATCCTGATCGGTCATGATCATGATGCTGCCGTAACGCAGGCTGTTGACGTCG 20139 Query 176717 TGATAATCCTTACCTTGTTGAAGACCCAAAATCTTCTTGAGATCATTGAACTCTTGGTTT 176776 | || | ||| || || |||||||||| || | ||||| | |||| || |||| Sbjct 20140 AGGTACTGCTTGCCGTGCTGAAGACCCAGGATTTCCTTGATTGCCTTGATTTCGGCGTTT 20199 Query 176777 GATGTGAGTTGCGCCACTGAAGCGTCGCGGACATTTTTACACTTCCCGCGGAGAGGGAAC 176836 ||| || | || || |||||||| || | ||| ||||| || ||||| Sbjct 20200 TTCATGATCTGGTCGTGCGATGCCTCGCGGACGTTGAGAAGCTTACCGCGAAGGGGGAAT 20259 Query 176837 ACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAA 176896 || ||||||| || | || ||| | || ||| ||||| || || | || || || Sbjct 20260 ACTCCGTAGTTGTCCCTTCCGACCTCGACGATACCGGCAACGGCAAGCGATTTGGCCGAG 20319 Query 176897 TCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTC------CCCGCCTTG 176950 |||||||| || | ||||| || || ||| ||| ||| || || || ||| Sbjct 20320 TCACCCTCGGTGAGAATGAGTGTGCA--GTCC---TTG-GCCTTCCTGCCACCGGCGTTG 20373 Query 176951 TTCGCATCGTCCAACTTGGGAAT 176973 || ||||| || | |||||| || Sbjct 20374 TTGGCATCTTCGAGCTTGGGGAT 20396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613461708441120