Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq10 145 2e-29 seq67 120 7e-22 seq18 114 3e-20 seq402 89.7 1e-12 seq1804 86.0 1e-11 seq217 84.2 5e-11 >seq10 Length=322828 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| ||||| || || |||||||| || | ||||||||| | |||||| Sbjct 156346 CGGAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAAAGTG 156405 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || ||||||||||| || |||||||| ||||||||||| || ||| ||| Sbjct 156406 CGGCCATCCTCGAGCTGCTTTCCAGCAAAGATGAGTCGCTGCTGGTCAGGTGGAATGCCT 156465 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||| ||| |||| |||||| | | ||| || || | Sbjct 156466 TCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGACGATTCGACCTCGAGA 156525 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| || || | || || ||||| || || Sbjct 156526 GTGATCGTCTTGCCGGTCAAGGTCTTGACAAAGATCTG 156563 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| |||||||| ||||||||||| |||| |||||| |||| | || | || ||| Sbjct 156583 AGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCAGAGAGCGTGCGGCCGTCT 156642 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| ||||| |||||||| |||||||| || || ||| || || ||| Sbjct 156643 TCGAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGATCAGGTGGAATACCCTCCTTATCC 156702 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| || | |||||| | | || || || | ||||| ||| Sbjct 156703 TGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTC 156762 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||||||||| || ||||| || || Sbjct 156763 TTGCCCGTGAGAGTCTTGACAAAGATCTG 156791 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || |||||||| ||||||||||| || | ||||||||| | | || | || || Sbjct 83722 AGCACGAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAAAGGGTACGGCCGTCC 83663 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| ||||| ||||| || ||||||||||| || || || || ||| Sbjct 83662 TCGAGCTGCTTACCGGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCC 83603 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| |||||| | | || || || | ||||| ||| Sbjct 83602 TGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATGGTC 83543 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| || || ||||| || || Sbjct 83542 TTACCCGTGAGGGTCTTGACAAAGATCTG 83514 >seq67 Length=99859 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||||| ||||| ||||| |||| ||||||||| | | || | || || Sbjct 38335 AGGACCAAATGGAGGGTCGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCGTCC 38394 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||||||||| ||||||||||| || ||||| || ||| ||| || || ||| Sbjct 38395 TCGAGCTGCTTTCCAGCGAAGATGAGGCGTTGCTGATCGGGAGGAATGCCCTCCTTGTCC 38454 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| ||||| | | ||||| || | ||||| ||| Sbjct 38455 TGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGAAGACTCTACCTCGAGGGTGATGGTC 38514 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || ||||| || ||||| || || Sbjct 38515 TTACCAGTCAGAGTCTTGACAAAGATCTG 38543 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| | ||| |||||| || | ||||||||| | | || | || ||| Sbjct 37879 AGTACGAGGTGCAAAGTGCTCTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGACCGTCT 37938 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| ||||| ||||| | ||||||||||| || || ||||| ||| Sbjct 37939 TCCAGCTGCTTACCGGCAAAGATCAAGCGCTGCTGGTCAGGTGGGATACCTTCCTTGTCC 37998 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| || | ||||| | | || || |||||||| |||||| Sbjct 37999 TGGATCTTGGCCTTGACGTTGTCAATCGTGTCCGAAGACTCGACTTCCAACGTAATCGTC 38058 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| || || ||||| || || Sbjct 38059 TTTCCCGTGAGTGTCTTTACAAAGATCTG 38087 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || |||| || ||||||||| || ||||| ||||| || | ||||||||| | | || Sbjct 38098 CGGAGTCGCAAGACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCCGAGAGGGTG 38157 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||| || || ||||||||||||||||| || ||| ||| || Sbjct 38158 CGGCCGTCCTCGAGCTGCTTGCCTGCAAAGATGAGACGCTGCTGATCAGGAGGAATGCCC 38217 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| ||| |||| ||||| | | ||| || || | Sbjct 38218 TCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAAGATTCGACCTCGAGG 38277 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || | || || ||||| || || Sbjct 38278 GTAATGGTCTTGCCAGTCAAGGTCTTGACAAAGATCTG 38315 Score = 98.7 bits (108), Expect = 2e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| | || |||||| || | |||||| || | | ||| | |||||| Sbjct 37651 AGGACGAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGACCATCT 37710 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| || || ||||| |||||||||||||| || || || || ||| Sbjct 37711 TCCAACTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCC 37770 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| || | ||||| | | || || ||||| ||||| || Sbjct 37771 TGGATCTTGGCCTTGACGTTGTCAATCGTGTCCGAAGACTCGACTTCCAATGTGATGGTT 37830 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || ||||| || || Sbjct 37831 TTGCCAGTGAGCGTCTTGACAAAGATCTG 37859 >seq18 Length=237310 Score = 114 bits (126), Expect = 3e-20 Identities = 142/193 (74%), Gaps = 1/193 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||||||||| ||||||||||| |||| ||||||||| | | || | || || Sbjct 132605 AGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCC 132546 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||||||||| ||||| || ||||||||||| || || || || ||| Sbjct 132545 TCGAGCTGCTTTCCGGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCC 132486 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| || |||| |||||| | | || || || | || || ||| Sbjct 132485 TGAATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCCACCTCAAGGGTAATGGTC 132426 Query 199598 TTACCCG-TGAGA 199609 ||||| | ||||| Sbjct 132425 TTACCTGTTGAGA 132413 >seq402 Length=497 Score = 89.7 bits (98), Expect = 1e-12 Identities = 104/137 (76%), Gaps = 9/137 (7%) Strand=Plus/Plus Query 43123 AGAACTTGGCTGCGGATTGTCCAATCCTCAACATTTTTACCATACCC-ACGCCATTACGC 43181 || ||||||||||||||| |||||| | ||| |||||||||| ||| | | |||| | | Sbjct 221 AGGACTTGGCTGCGGATTATCCAATACCAAACGTTTTTACCATCCCCGAGGTCATTGCCC 280 Query 43182 T--TGGTGCA---ACTCTTT---CGAGAAGCGGTAGTTGAGGCTCTAAGGAGTTTCCCGC 43233 | || |||| ||||| |||| ||||||||| | ||||||||| || ||||| Sbjct 281 TGGTGCTGCACTCTATCTTTCGACGAGCCGCGGTAGTTTGGTCTCTAAGGACTTCCCCGC 340 Query 43234 AATTTGAGGATGTTGCC 43250 ||||||| | ||| ||| Sbjct 341 AATTTGACGGTGTCGCC 357 >seq1804 Length=279 Score = 86.0 bits (94), Expect = 1e-11 Identities = 69/81 (85%), Gaps = 2/81 (2%) Strand=Plus/Plus Query 43091 CCTTTTAGTCTCTGAACCTTTT-CTTCTTTCGAAGAA-CTTGGCTGCGGATTGTCCAATC 43148 || ||||||||||||||||| |||||| |||||| |||||||||||||||||||||| Sbjct 193 CCATTTAGTCTCTGAACCTTCCACTTCTTGCGAAGAGGCTTGGCTGCGGATTGTCCAATC 252 Query 43149 CTCAACATTTTTACCATACCC 43169 | | |||||||||||||| Sbjct 253 TCTAGCGTTTTTACCATACCC 273 >seq217 Length=1423 Score = 84.2 bits (92), Expect = 5e-11 Identities = 100/132 (76%), Gaps = 14/132 (11%) Strand=Plus/Minus Query 43127 CTTGGCTGCGGATTGTCCAATCCTCAACATTTTTACCATACCC-ACGCCATTACGCT--T 43183 |||||||||||||||||||||| | | |||||||||||||| | ||||||| || | Sbjct 1417 CTTGGCTGCGGATTGTCCAATCTCTAGCGTTTTTACCATACCCGAGGCCATTAACCTGGT 1358 Query 43184 GGTGCA-----ACTCTTTCGA----GAAGCGGTAGTTGAGGCTCTAAGGAGTTTCCCGCA 43234 | |||| | ||| ||| | ||||||| | |||||||||||||||||||| Sbjct 1357 GCTGCACCCCTAATCTCACGATGGGGCCGCGGTAGCTAGAGCTCTAAGGAGTTTCCCGCA 1298 Query 43235 ATTTGAGGATGT 43246 |||| |||||| Sbjct 1297 ATTT--GGATGT 1288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178831997537444