Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq21 334 8e-87 seq10 134 1e-26 seq67 127 2e-24 seq18 87.8 2e-12 >seq21 Length=224232 Score = 334 bits (370), Expect = 8e-87 Identities = 589/842 (70%), Gaps = 21/842 (2%) Strand=Plus/Plus Query 132610 TATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATA 132669 |||||| | ||||| |||||||| || || || || || | || || || ||||||| Sbjct 32124 TATTCGGCGACCTTCTTCTCAAAGAAGTTGGTCTTACCTTGCAGCGAGATCGACGTCATA 32183 Query 132670 AAATCCAAGGGGTTGGCTGTGTTGTAGTG---CTTGGTGCCGATCAGGTCGACGAGCAGC 132726 || || || ||| | | | |||||| | | | |||| || || | || Sbjct 32184 AAGTCGAATGGGCATGTGGCGCCGTAGTGGACCGGGTTTCCGA---GGGAAACCAAGAGA 32240 Query 132727 CTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGC 132786 | ||| |||||| |||| ||||| || |||||| | || | || | || ||| Sbjct 32241 CGGTCAGCCACGTACTCAATGTACTGGCACATGGCCTTCTGGTTCATGCCAATGAG-CGC 32299 Query 132787 -ACCGGCA-GCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTT 132844 || |||| || || | ||||||| || ||||| |||| || ||| ||| ||| | Sbjct 32300 TACGGGCAAGCTCTCTGTCAAGAAAGCCTTT-TCGATTTCGACGGCCTCGCTGATGATCT 32358 Query 132845 CCCTAACGCGCGCCGCGCTCGGC-CGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAG 132903 || | | || | | ||| || | | | || |||| | |||||| |||||| Sbjct 32359 TGAGGACA-GTGTCGGGGTGGGCGCGCTTCTTGAGGTGGCTGAAGAGCAAGCAGGCAAAG 32417 Query 132904 TCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATG 132963 ||| || | |||||||| | ||| ||||| |||||| ||| || | ||||||||| Sbjct 32418 TCGGTGTGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGACCGGGCATG 32477 Query 132964 AGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCG 133023 || || || || |||||||| || |||| || || |||||| ||||||| ||||||| Sbjct 32478 AGACCACGCTTCTTGAGCCAGAAGATGGATGCAAAGGAGCCCGAGAAGAAGATGCCCTCG 32537 Query 133024 ACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGC 133083 ||||| |||||||| || || |||||| | || ||||| || | |||||| || Sbjct 32538 ACGGCGGCGAAAGCAACGAGACGCTCGGCAAAGGTGGCGCGCCTGTCGCTGATCCATCGA 32597 Query 133084 AGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGG 133143 || ||||| |||||||| | |||||| || || || |||| |||| |||| | | | Sbjct 32598 AGAGCCCAGTCGGCCTTCTGCTTGACGACGGGGATGGTCTCGACGGCG-TCAA-AGAGGA 32655 Query 133144 AGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGT 133201 | | | || | || ||| | ||| | |||||||||| ||| || | || |||| Sbjct 32656 ATTCACGCTGCTCGGGTTCGCGAATGTACGAGTCGATGAGGAGCGAGTAGGTCTCGGAGT 32715 Query 133202 GTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTT 133261 | | ||||||||| ||| || || ||||| ||||| || |||||| | |||| |||| Sbjct 32716 GGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAGCGGGCCTCGGCAGCCTGAACTT 32775 Query 133262 CTTGAGC-GAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAG 133320 | |||| |||||||||||| || || ||||||||||| |||||| |||||||| || Sbjct 32776 C-GGAGCTGAAACGCTCGACTAGGTTCTCGTTGACGATACCGTCGGAAGCGGCGAAGAAA 32834 Query 133321 GCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTT---CAAGCGCTCCCAGTCGCGC 133377 || || ||||| ||| || ||||||||||||||||| | | ||||||||| | Sbjct 32835 GCAAGGACGTGGGAGATAAAGTGGCGCTCGTTGTCGTTGAGCTTGTTGTCCCAGTCGTGA 32894 Query 133378 GTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTAC 133437 |||||||| ||||| | |||||| ||||||| || || |||||||| || |||||| Sbjct 32895 AGATCCTTGGAAAGGTCGATCTCCTCTGCGGTCCAGAAGGAAGCCTCGGCCTTCTTGTAC 32954 Query 133438 AT 133439 || Sbjct 32955 AT 32956 >seq10 Length=322828 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||||||||| ||||||||| |||| |||||| || || Sbjct 156794 ATGCAGATCTTTGTCAAGACTCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCC 156735 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| || || ||||| ||||| | || || Sbjct 156734 GACACCATTGACAACG-TCAAGGCCAAGATCCAGGATAAGGAGGGTATTCCACCTGATCA 156676 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | || ||||| ||||| || |||| ||||| ||| || ||||| Sbjct 156675 GCAGCGACTCATCTTTGCCGGCAAGCAGCTCGAAGACGGCCGCACGCTCTCTGATTACAA 156616 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| ||||||| || | || || ||| || | || || Sbjct 156615 CATCCAGAAGGAGTCGACGCTCCACCTCGTCCTCCGTCTGCGTGGTGG 156568 Score = 109 bits (120), Expect = 5e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || || || |||||||| || ||||||||| |||| || ||| | Sbjct 83508 AAGATGCAGATCTTTGTCAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTTGAGTCT 83567 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || |||| ||||| ||||| || ||| ||||| Sbjct 83568 TCGGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCCGAC 83627 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || || | || || || ||||| || |||| || ||||| |||||| Sbjct 83628 CAGCAGCGCCTGATCTTTGCCGGTAAGCAGCTCGAGGACGGCCGTACCCTTTCGGACTAC 83687 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| || ||||| |||| || || | ||||| || Sbjct 83688 AACATTCAGAAGGAGTCGACCCTCCACCTCGTGCTTCG 83725 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || ||||| || ||||| |||| ||||| | | Sbjct 156566 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACGATCACTCTCGAGGTCGAATCGTCG 156507 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || || | ||||| || || ||||| | ||||| Sbjct 156506 GACACCATCGACAACG-TCAAGGCCAAGATTCAGGACAAGGAAGGCATTCCACCTGACCA 156448 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | || || || ||||| || || | ||||| | ||||||||| Sbjct 156447 GCAGCGACTCATCTTTGCTGGAAAGCAGCTCGAGGATGGCCGCACTTTGTCCGACTACAA 156388 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| || ||||| | || ||||| |||| |||||| Sbjct 156387 CATTCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGT 156351 >seq67 Length=99859 Score = 127 bits (140), Expect = 2e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || || || ||||||||| |||| || ||| | || Sbjct 38546 ATGCAGATCTTTGTCAAGACTCTGACTGGTAAGACCATCACCCTCGAGGTAGAGTCTTCC 38487 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || |||| ||||| ||||| ||||| |||| || Sbjct 38486 GACACGATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGATCA 38428 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || ||||| | ||| || || ||||| || |||| || |||||| |||||||| Sbjct 38427 GCAACGCCTCATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGTACCCTCTCGGACTACAA 38368 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| |||||| |||| || |||||||| || ||| Sbjct 38367 CATCCAGAAGGAATCGACCCTCCATTTGGTCCTCCGT 38331 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || ||||| ||||| ||| |||| ||||| | | Sbjct 38318 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAGACCATTACCCTCGAGGTCGAATCTTCG 38259 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || |||| ||||| ||||| ||||| | || || Sbjct 38258 GACACGATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGATCA 38200 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | || ||||| ||||| || |||| ||||||||| |||||||| Sbjct 38199 GCAGCGTCTCATCTTTGCAGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAA 38140 Query 38423 CATCCAAAAGGAAGCGACGCTGCA 38446 ||| || |||||| |||| || || Sbjct 38139 CATTCAGAAGGAATCGACCCTTCA 38116 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || |||||||| |||||||||||||| | || |||||| | | Sbjct 37862 ATGCAGATCTTTGTCAAGACGCTCACTGGCAAAACCATCACATTGGAAGTCGAGTCTTCG 37803 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || |||| | || | || |||| ||||| ||||| || || | ||||| Sbjct 37802 GACACGATTGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCACCTGACCA 37744 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || || || ||| |||| || | ||||| || ||| ||||| Sbjct 37743 GCAGCGTCTGATCTTTGCTGGTAAGCAGTTGGAAGATGGTCGCACTCTTTCCGATTACAA 37684 Query 38423 CATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| || ||||| ||| || |||| | || || ||| | | ||||| Sbjct 37683 CATTCAGAAGGAGAGC-ACCTTGCACCTCGTCCTCCGTCTCCGTGGCGG 37636 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || ||||| || |||||||| || || || || | || |||||| | | Sbjct 38090 ATGCAGATCTTTGTAAAGACACTCACGGGAAAGACGATTACGTTGGAAGTCGAGTCTTCG 38031 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || |||| | || | || |||| ||||| || || || || | ||||| Sbjct 38030 GACACGATTGACAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGTATCCCACCTGACCA 37972 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | || || || |||||||| |||| ||||| ||| |||||||| Sbjct 37971 GCAGCGCTTGATCTTTGCCGGTAAGCAGCTGGAAGACGGTCGCACGCTCTCGGACTACAA 37912 Query 38423 CATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| || ||||| ||| || |||| | || || || ||| | || || Sbjct 37911 CATTCAGAAGGAGAGC-ACTTTGCACCTCGTACTTCGATTGCGCGGAGG 37864 >seq18 Length=237310 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAA 38327 || || || ||||| ||| | || || ||| || | |||| | | | | | || | Sbjct 132418 ACAGGTAAGACCATTACCCTTGAGGTGGAGTCCTCGGACACCATCGACAATGTCAAGGCC 132477 Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || || | ||||| ||||| || ||| ||||||| ||||| || || | || || || Sbjct 132478 AAGATTCAGGACAAGGAGGGTATCCCCCCCGACCAGCAGCGCCTGATCTTTGCCGGAAAG 132537 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 ||||| || |||| ||||| ||| |||||||||||||| ||||| |||| || || Sbjct 132538 CAGCTCGAGGACGGCCGCACGCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTCCAC 132597 Query 38448 TTGGTGCTGCGTTTGAGAGGCGG 38470 | || || ||| || | || || Sbjct 132598 CTTGTCCTCCGTCTGCGTGGTGG 132620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500135712186880