Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq3 423 2e-113 seq88 136 5e-27 seq4 134 2e-26 seq20 91.5 2e-13 >seq3 Length=439134 Score = 423 bits (468), Expect = 2e-113 Identities = 783/1139 (69%), Gaps = 10/1139 (1%) Strand=Plus/Minus Query 7022 ATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTC 7081 |||||||| || || | || ||||| ||||| ||||| |||||||| |||| || || Sbjct 210867 ATGGCGGCCTGAACGGCGGCACCGTAGGCGACAGCCTCGTCGGGGTTGATCGACTTGTTG 210808 Query 7082 AGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGAT 7141 || || ||||| || | || | | | | || | || ||||| || || || Sbjct 210807 AGCTCGCGGCCGTTGAAGAAGTCGGTGAGGAGCTTCTGGACCTTGGGGATACGGGTGGAG 210748 Query 7142 CCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTT 7201 |||||||| | ||||| || | || || |||||||| ||||| ||||| Sbjct 210747 CCACCGACAAGGACGATCTCGTGAACGGAGCCCTTGTCGATCTTAGAGTCGCGAAGGACC 210688 Query 7202 TTTTCGACAGGTTCCATACATTTACG-GAACAAGTCCATACACAGTTCCTCAAAACGTGC 7260 || ||||| || || || | | || ||| | ||| ||| || ||||| ||||| || Sbjct 210687 TTCTCGACGGGCTCGATGG-TGTGCGAGAAGAGGTCACCACAGAGCTCCTCGAAACGGGC 210629 Query 7261 ACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGT 7320 |||||| ||||| || || || || | || ||| | | ||| || || || ||||| || Sbjct 210628 ACGGGTGATGGAGGTGTAAAAGTCGATACCCTCGAAGAGCGAGTCGATCTCGATGGTGGT 210569 Query 7321 TTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAG 7380 || || | ||| || | |||||||| || |||||||| || || || | |||||| || Sbjct 210568 CTGGGCAGCCGACGAGAGGGTTCGCTTGGCACGCTCACAGGCGGTGCGGAGACGACGGAG 210509 Query 7381 GGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTG 7440 |||||| | ||| || | || ||||| | || || || ||||| | |||||| Sbjct 210508 GGCACGGGCGTTGGAGGTCAAGTCCTTCTTGTTCTTGCGCTTGAACTCCTGGACGAAGTG 210449 Query 7441 TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTT 7500 | ||| | || || || |||||||| | ||| || || || ||||| || || Sbjct 210448 GTTGACGAGACGGTTGTCAAAGTCCTCACCACCAAGGTGGGTGTCACCTGCGGTGGCCTT 210389 Query 7501 GACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAG 7560 ||||||||||||||| | || ||| | | | ||| ||||| || ||||| ||||| || Sbjct 210388 GACTTCAAAGATACCCTCCTCGATGGTCAGGAGCGAGACATCGAAAGTACCTCCACCGAG 210329 Query 7561 GTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGC 7620 || || ||||| |||||| | || | || | ||||| ||||||||||| |||||||| Sbjct 210328 ATCGAAGATGAGGACGTTCTTCTCACCCTCAGTCTTCTTGTCGAGACCGTAAGCGATAGC 210269 Query 7621 CGCCGCCGTTGGTTCATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCAT 7679 || || || || || || || || || | ||| ||| || || | ||| | | |||| Sbjct 210268 GGCAGCGGTGGGCTCGTTGATGATTCGCATGAC-GTTGAGACCGGAAATGATACCGGCAT 210210 Query 7680 CTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCG 7739 | || || ||||| || ||||| ||||| ||||| || ||||| || ||||| || ||| Sbjct 210209 CCTTGGTGGCTTGACGCTGCGAGTCGTTGAAGTAAGCGGGGACAGTGACGACGGCATCCT 210150 Query 7740 TGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATG 7799 |||| | |||||| || | || ||| | || ||| ||| |||||||| || | Sbjct 210149 TGACGGTGCCACCGAGGTAAGCCTCAGCGGTCTCGCGCATCTTGAGGAGAACCATGGACG 210090 Query 7800 AAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTT 7859 | |||||||| | | || ||| | ||||| || | || | |||| || | Sbjct 210089 AGATCTCTTCGGGAGTGAAGGTCTTCTTCTCACCCTTGTACTCGATGCGAATC-TGAGGC 210031 Query 7860 TATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTT 7919 | || | | || | || | |||| | | ||| | ||||| ||| || |||| Sbjct 210030 TTGCCACCG-ACAGAGG-TGACCTCGAAGGGCCAGTGCTTCATGTCGGACTGAACCTCGG 209973 Query 7920 GGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCA 7979 ||| ||||| | || || |||||||| ||||| || || ||||| | ||||||| Sbjct 209972 CGTCATCGAACTTGCGGCCAATGAGACGCTTGGCATCGAAGACGGTGTTGTGAGGGTTCA 209913 Query 7980 TGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGA 8039 | || |||||||| || || || ||||| ||||| || | || || || |||| Sbjct 209912 TAGCAACCTGGTTCTTGGCGGCATCTCCGATGAGACGCTCCGAA---TCAGTGAAGGCGA 209856 Query 8040 CGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTT 8099 | || || ||||| || || || || |||||||| ||||| | || || ||||| |||| Sbjct 209855 CATATGAGGGGGTGGTACGGTTACCCTGGTCGTTGGCAATGACCTCGACACGGTCATTTT 209796 Query 8100 GCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGCTTGAGTCATT 8158 ||||||| |||| ||||| || || || || | ||| |||||||| || | |||||| Sbjct 209795 GCCAGACAGCGACACACGAGTAAGTAGTACCAAGATCGATACCGATGGCCTTGGTCATT 209737 >seq88 Length=77048 Score = 136 bits (150), Expect = 5e-27 Identities = 451/694 (65%), Gaps = 22/694 (3%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || |||||||| | ||| || || || ||||| || || ||||||| ||| Sbjct 41140 TCAAAGTCCTCACCACCAAGGTGGGTGTCACCGGCGGTGGCGAGTACCTCAAAGACACCA 41199 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || || | | ||| ||||| || ||||||||||| || || | | | | Sbjct 41200 GAGTCGATCGAGAGGAGCGAGACATCGAAAGTACCACCACCGAGATCGTAGACAATGATC 41259 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 | || ||| |||| ||||| || |||||||| ||||| || || || || || || Sbjct 41260 TGCGACTCGCCGTC---CTTCTTGTCAAGACCGTAAGCGATGGCAGCGGCGGTGGGCTCG 41316 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || | || || || ||| || || || || || | ||||| || || || ||||| Sbjct 41317 TTGACGATTCGGAGCACGTTGAGACCGGCGATGGTACCGGCATCCTTGGTGGCCTGTCGC 41376 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || | ||||| || ||||| || || || || || || | ||||| || | ||||| Sbjct 41377 TGGGCGTCGTTGAAATAGGCGGGAACGGTGACAACGGCATGGGTGACCTTGTGGCCGAGG 41436 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || | || ||| | || |||||||| ||||||||| | || | ||| || | | Sbjct 41437 TAAGCCTCAGCGGTCTCCTTCATTTTTTGAAGAACCATGGCCGAGACCTCCTCGGGGGTG 41496 Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCG--CAGCACCGG 7874 || ||| | || ||||| | ||| | || || || ||| | | | Sbjct 41497 AAGACCTTCTTGTCGCCGTTGACGATAACCTGGATAGCAGGCTT-GCCGTTCTTCTC--- 41552 Query 7875 GGATAACCTTATACGACCAAT-CTTTCATATCGTCTTG-GA-CCTGTTGGTCCGAAAACT 7931 || | |||| | | | ||| | ||||| || || | | || ||| Sbjct 41553 -GACGAGCTTAAAGGGGAGGTGCTTGGCGTCCTTCTTGAGATCCGACTCGCCC---CACT 41608 Query 7932 TTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGT 7991 | | ||||| |||||||| || ||||| | ||||||| ||||||| || | |||| Sbjct 41609 TGCGACCGATGAGACGCTTGGCGTCAAAGATGGTGTTTTCGGGGTTCTGAGCGGCCTGGT 41668 Query 7992 TCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGG 8051 |||| || ||||| |||| |||||| || ||||| |||||||| || || | Sbjct 41669 TCTTGGCGGCGTCTCCGACAAGACGCTC------GGGGGTAAATGCGACGTAGGAAGGAG 41722 Query 8052 TCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGA 8111 | | || || || |||||||| | || ||||| || ||| |||| | |||||| Sbjct 41723 TGATACGGTTACCCTGGTCGTTGGTGATGATTTCGACACGGCCGTTGACCTGTGCGCCGA 41782 Query 8112 CGCACGAATACGTTGTTCCTAAATCAATACCGAT 8145 | |||||||| || ||||| | ||| ||||| || Sbjct 41783 CACACGAATAGGTAGTTCCGAGATCGATACCAAT 41816 >seq4 Length=437454 Score = 134 bits (148), Expect = 2e-26 Identities = 275/407 (68%), Gaps = 4/407 (1%) Strand=Plus/Plus Query 7247 TCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306 ||||| ||||| |||||||| ||| | | ||| ||||| || | | | | ||| || Sbjct 402674 TCCTCGAAACGGGCACGGGTGATGTTGGCCTGGAAGTCAACACCCTGGAAGAGCGAGTCG 402733 Query 7307 ATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTT 7366 | || | ||| || || | ||| || | || ||||| || |||||||| |||| Sbjct 402734 ACCTCGACGGTGGTCTGGGTGACCGACGAAAGGGTACGCTTGGCACGCTCACAGGCCGAA 402793 Query 7367 CGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAAC 7426 || | ||| |||| |||||| | || ||| || || || ||| | || || | |||| Sbjct 402794 CGGAGACGGCGAACGGCACGGGCGTCACCCGAGATGTCAAGCTTGTTCTTGCGCTCAAAC 402853 Query 7427 TCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCC 7486 || | |||||| |||||| ||||| || |||||||| | ||| || || Sbjct 402854 TCCTTCTTGAAGTGGTCAAGGAGGGCGTTGTCGAAGTCCTCACCACCAAGGTGGGTGTCA 402913 Query 7487 CCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAAC 7546 || ||||| || ||||| | |||| ||| || ||||| | | ||| ||||| || Sbjct 402914 CCAGCGGTGGCCTTGACGGCGAAGACACCACCGGTGATGTTGAGGAGCGAGACATCGAAA 402973 Query 7547 GTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTG--TTCTTATCGA 7604 || || ||||| || || | ||||| |||||| | ||| ||| | || |||| Sbjct 402974 GTTCCTCCACCGAGATCGTAGATGAGGACGTTCTTCTCG--GTCGAGGACTTGGAGTCGA 403031 Query 7605 GACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGA 7651 ||||||| || || || || || || || || || || ||||| ||| Sbjct 403032 GACCGTAGGCAATGGCGGCAGCAGTGGGCTCGTTGATGATACGGAGA 403078 Score = 104 bits (114), Expect = 3e-17 Identities = 278/422 (66%), Gaps = 6/422 (1%) Strand=Plus/Plus Query 7676 GCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCG 7735 ||||| || || || | || ||||| ||||| ||||| || ||||| || | || || Sbjct 403494 GCATCCTTGGTGGCGAGACGCTGCGAGTCGTTGAAGTAAGCGGGGACGGTGATAACGGCC 403553 Query 7736 TCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATC 7795 | | |||| | ||| |||| | | || ||||| || ||||| ||||| || ||||| Sbjct 403554 TTCTTGACCTCCTTGCCGATCTTGGCCTCGGCGATCTCCTTCATCTTGGTGAGGACCATG 403613 Query 7796 GATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATG 7855 || || ||||| | | | ||||| || || ||||| | | || || || | | Sbjct 403614 GAAGAGATCTCCTGGGGGGAGAACTGCTTGGTCTCACCAAGGTAGTTGACCTCGATGAAG 403673 Query 7856 GGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACC 7915 || | ||| | | ||| || | | | ||| | | ||| || | | ||| Sbjct 403674 GGAG-AGCCGT--CCTTGTCGATGACGGTGAAAGGCCAGTGCTGCATGTCCTTCTTGACG 403730 Query 7916 TGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGG 7975 | |||| | | |||||||||||||| || || || || || | |||| Sbjct 403731 TCAGGGTCATCGTATCGGCGACCGATAAGACGCTTGGCGTCGAAGACGGTCTGGCGGGGG 403790 Query 7976 TTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAAC 8035 ||||| || | |||||||| || || || ||||| ||||| || | || || || Sbjct 403791 TTCATAGCGGCCTGGTTCTTGGCAGCATCACCGATGAGACGCTC---GCTCTCGGTGAAA 403847 Query 8036 GCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCG 8095 ||||||||||| ||||| || || || || ||||| || || || ||||| || || ||| Sbjct 403848 GCGACGTACGAGGGGGTGGTGCGGTTACCCTGGTCATTGGCGATGATTTCGACACGCTCG 403907 Query 8096 TT 8097 || Sbjct 403908 TT 403909 >seq20 Length=226364 Score = 91.5 bits (100), Expect = 2e-13 Identities = 198/292 (68%), Gaps = 16/292 (5%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||| | ||| || || || ||||| ||||| || || ||| Sbjct 178531 TCGAAGTCCTCACCACCAAGGTGGGTGTCACCGTTGGTCGACTTGACCTCGAA--TACGC 178588 Query 7517 CCTTCAATGTTT-AACAA-CGAAACATCAAACGTACCACCACCCAGGTCAAAAATG---A 7571 ||||| ||| || || ||| | |||||| || || || |||| ||| || | | | Sbjct 178589 CCTTCTGCATTTCAAGAATCGAGATATCAAAAGTTCCTCCTCCCAAGTCGAAGACGGCGA 178648 Query 7572 GTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTG 7631 ||| || |||||| || |||||||||| || | ||| || || || | Sbjct 178649 TGACGGACGA---GTCGTCACGGT------CGAGACCGTAGGCAAGAGCGGCGGCGGTGG 178699 Query 7632 GTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTT 7691 | || || || | |||||| || || ||||| || | | ||||| || || || | Sbjct 178700 GCTCGTTGATGACACGAAGGACGTCAAGACCAGCGATGGCACCGGCATCCTTGGTAGCCT 178759 Query 7692 GTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGAC 7743 |||| ||||| ||||| ||||| || ||||| || | ||| |||| | |||| Sbjct 178760 GTCGCTGCGAGTCGTTGAAGTAAGCGGGGACAGTGATGACGGCGTGCTTGAC 178811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635085704902880