Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq4 259 6e-64 seq21 131 2e-25 seq62 122 1e-22 >seq4 Length=437454 Score = 259 bits (286), Expect = 6e-64 Identities = 903/1387 (65%), Gaps = 33/1387 (2%) Strand=Plus/Plus Query 111619 ACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTTTTGGAGA 111678 ||||| ||||||| ||||| | || ||||| || |||| || || | | |||| Sbjct 48216 ACATGCTCATGCGTGTCGCTGTTGGCATCCACGGTCAAGACATCGAGAGCGCCATCGAGA 48275 Query 111679 CATACGACAAGATGTCCCGTGGTATG-TTCATCCACGCAACACCAACCCTCTTCAACGCT 111737 | ||| | ||||||| | || || | |||||| | || ||||||||||||||| Sbjct 48276 CTTACAATCTCATGTCCCA-GAAATACTTTACCCACGCCTCGCCCACCCTCTTCAACGCT 48334 Query 111738 GGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGATTCAATC 111797 ||||||||| || || | || || ||||| | | | ||||| || || ||| Sbjct 48335 GGTACACCACACCCACAGCTCTCGTCGTGCTTCCTGGTCACCATGAAGGACGACTCGATC 48394 Query 111798 AATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGTGGTATC 111857 | ||||| |||| ||| |||| |||||| ||||| ||| || ||||||||| Sbjct 48395 GACGGCATCTACGACACGCTCAAGACGTGTGCCATGATCTCCAAGACCGCCGGTGGTATC 48454 Query 111858 GGGATGCACATCCA-TGATGTCAGAGCCAACAAGTCTCGTAT-TAGA-GGTACAAATGGT 111914 || | ||||||| || || | | | | | |||||| | | || || || ||| Sbjct 48455 GGTCTCAACATCCACTGCATTC-GCGGTACC--GGCTCGTACATCGCCGGCACCAACGGT 48511 Query 111915 CAATCAG--ATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAA 111972 |||| | ||||| | || ||||| ||||| |||||| ||| || ||||| || Sbjct 48512 G--TCAGTAACGGTATCGTACCCATGCTCCGCGTCTTTAACAACACTGCCCGCTACGTCG 48569 Query 111973 ACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACG 112026 |||| | ||| ||||| ||| | | || |||| |||||||||||||| Sbjct 48570 ACCAGGGTGGCAACAAGCGTCC---GGGTGCCTTTGCCATCTACATTGAGCCATGGCACT 48626 Query 112027 CGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCC 112086 ||||| || | |||||||| || | || ||||| || | || ||| ||| || Sbjct 48627 CGGATGTCTTTGAGTTCCTCGATCTCCGCAAAAACCACGGCAAGGAAGAGATGCGTGCCC 48686 Query 112087 GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTG 112146 | || ||||||| ||| |||||| | || ||||||||||||||||| || ||| ||| | Sbjct 48687 GTGAGCTCTTCTACGCCCTCTGGGTCCCCGATCTCTTCATGAAGAGGGTCGAGCAGAACG 48746 Query 112147 GCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGG 112206 || | ||||| ||| | || || || || || |||||| |||| | || || | Sbjct 48747 GCGACTGGTCGCTCATGTGCCCCAACGAGTGCCCAGGTCTCGCCGACTGCTACGGCGACG 48806 Query 112207 AGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCG-ACGGTGCCA 112265 ||||||| ||||||| ||||||| || |||| | | ||| || || | | Sbjct 48807 AGTTTGAGCGCCTCTACGAGCGCTACGAGGCCGAGGGTCGCTCCA-AGCGAACCGT-CAA 48864 Query 112266 GCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATAT 112324 | || || | | ||| | || || ||| ||| || |||||||| || | || | || Sbjct 48865 GGCGCAGAAGCTCTGGTACGCCATCCTCGAGTGCCAGACCGAGACCGGCAACCCCTTCAT 48924 Query 112325 GCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAG 112384 || ||||| ||||| |||| ||||| || || ||||| | || |||||| | Sbjct 48925 CCTCTACAAGGACGCTGCCAACCGCAAGAGCAACCAGAAGAACCTCGGCACCATCAAGTG 48984 Query 112385 TTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAA 112444 |||||| | || || || ||| | || | | | | || ||| || || || || Sbjct 48985 CTCCAACTTGTGCACCGAGATCATCGAGTACAGCGCCCCCGACGAGGTTGCCGTCTGCAA 49044 Query 112445 CCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGA 112504 ||| || |||||||| || |||| | | | || || | | || || | || | | Sbjct 49045 CCTGGCCTCAATCGCCCTGCCCACCTTTATCGACCCTGTCGCCAAAACGTACGACTTCAA 49104 Query 112505 AAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAA 112564 || ||| || | || | || || || || |||| | ||||| | || Sbjct 49105 GCGTCTTCACAGCGTCGCCAAGGCCATCTGCAAGAATCTCAACAAGATCATTGACATCAA 49164 Query 112565 TTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGG 112624 | || || || ||| || || | ||| || ||| | ||||| || |||||| |||| Sbjct 49165 CTACTATCCTGTCGAGGAGGCCCGCAGATCCAACATGCGCCACCGCCCCATTGGTATCGG 49224 Query 112625 TGTCCAAGGTCTCGCGGATGTATTCAT--TCTTTGTCGCCACGCATTTGATTCCGACGAA 112682 ||||||||||||||| || | ||||| || | | || |||| ||||| || ||| Sbjct 49225 TGTCCAAGGTCTCGCCGACGCCTTCATGATCATGG--GCTACGCCTTTGAGTCGCCCGAG 49282 Query 112683 GCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCGA-- 112740 || |||| | | || |||||||| || || ||||| || || || ||| Sbjct 49283 GCTCGTCGCCTCAACGTACAGATCTTTGAGACCATCTACCACGCTGCCCTCGA-ACGATC 49341 Query 112741 GTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCAC 112800 || | ||| |||| ||| | || | || || |||| | || || || || || | Sbjct 49342 GTGC-GAGCTGGCTCAGGAGCACGGCACCTACGAGACCTACGCTGGCTCGCCTGCCTCGC 49400 Query 112801 AAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGACTGGGACG 112860 | || | ||| || | || ||||||| | | | | | || ||||||| | Sbjct 49401 AGGGTGAGCTGCAGTACGACATGTGGGGCGTCACGCCTTCGGACCTCTGGGACTGGGCAG 49460 Query 112861 CTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGC 112920 ||||||| ||| || | |||||||| ||| || ||| | || || |||| Sbjct 49461 AGCTCAAGGCTAAGATCGCCAAGCACGGTCTTCGCAACTCGCTCTTGCTCGCTCCTATGC 49520 Query 112921 CAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGA 112980 | || ||||| ||| || ||||||||| || || ||||| || || ||||| | | Sbjct 49521 CTACTGCCTCGACCAGTCAGATCTTGGGTTTCAACGAGTGCTTCGAGCCTTACACCTCCA 49580 Query 112981 ACATCTA 112987 ||||||| Sbjct 49581 ACATCTA 49587 >seq21 Length=224232 Score = 131 bits (144), Expect = 2e-25 Identities = 127/161 (79%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 102172 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 102231 ||||||| ||||| ||| | || || || || ||||| ||||||||||| || |||| Sbjct 32571 CCTTTGCCGAGCGTCTCGTTGCTTTCGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCCT 32512 Query 102232 TCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 | ||| | || | |||||||||||||| ||||||||||| ||||| |||||||||| Sbjct 32511 T-TGCATCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTTACCTTCTCCAAC 32453 Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||| ||||| ||||||||||| || ||| || ||||| Sbjct 32452 GAGCTCATCTCCCGTGACGAGGGTCTTCACACCGACTTTGC 32412 >seq62 Length=112892 Score = 122 bits (134), Expect = 1e-22 Identities = 237/347 (68%), Gaps = 6/347 (2%) Strand=Plus/Plus Query 176723 TTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGA 176782 |||| ||||||||||||||||| |||||||||| ||| ||| ||||||||||||| Sbjct 20053 TTGATGATGAGACCCTTGATGTGCGAACCGTCGTGATCCTGATCGGTCATGATCATGATG 20112 Query 176783 CGACCATACCGAAGCTCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATC 176842 | || || || || | || || | || | ||| || || |||||||||| ||| Sbjct 20113 CTGCCGTAACGCAGGCTGTTGACGTCGAGGTACTGCTTGCCGTGCTGAAGACCCAGGATT 20172 Query 176843 TTCTTGAGATCGTTGAACTCTTGGTTTGATGTGAGCTGTGTGACAGAGGCATCACGAACA 176902 | ||||| | |||| || |||| ||| ||| | || || || || || Sbjct 20173 TCCTTGATTGCCTTGATTTCGGCGTTTTTCATGATCTGGTCGTGCGATGCCTCGCGGACG 20232 Query 176903 TTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCGCGACCAACCACAGAGAGA 176962 || | ||| || ||||| ||||| || ||||||| || | || ||| | || | Sbjct 20233 TTGAGAAGCTTACCGCGAAGGGGGAATACTCCGTAGTTGTCCCTTCCGACCTCGACGATA 20292 Query 176963 CCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTGTCACGATGAGTGTACA---CTTG 177019 || ||||| || |||| ||| || || |||||||| || | |||||||| || |||| Sbjct 20293 CCGGCAACGGCAAGCGATTTGGCCGAGTCACCCTCGGTGAGAATGAGTGTGCAGTCCTTG 20352 Query 177020 CCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCAATTTGGGAAT 177066 | | |||| ||| || ||||| ||||| || | ||||| || Sbjct 20353 GC-CTTCCTGCC--ACCGGCGTTGTTGGCATCTTCGAGCTTGGGGAT 20396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620696371951040