Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq4 194 2e-44 seq33 129 7e-25 seq21 107 2e-18 >seq4 Length=437454 Score = 194 bits (214), Expect = 2e-44 Identities = 1110/1756 (63%), Gaps = 47/1756 (3%) Strand=Plus/Minus Query 109401 CTTCGAGCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCAT 109460 ||| | ||| || || || |||| || |||||||| |||||| |||| | ||||| Sbjct 49939 CTTGGTGCGCAGGTAGTAGGTACCGGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGCAT 49880 Query 109461 TGAAGAGAGTTTG--GAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGA 109518 || | ||| | | ||| ||| || | | | | ||| | |||||| ||||| Sbjct 49879 CGAGGTGAGCTGGCCGAACGTG--GGCGCCGAGAGATGGATGTTGAGCGACTGCGACTGG 49822 Query 109519 TCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAG 109578 |||||| ||| || || || |||||||||||||| ||| ||||| || |||||| Sbjct 49821 CAGATGAAGGCACCGCGGTCGGCGGCCATGTCGATGATGGCCTTCTGGCTGATCTCCCAG 49762 Query 109579 ACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCA 109638 || |||||||| | |||||||| ||||| ||| | | ||| || || || || Sbjct 49761 ACGGTCTTGTAGAGCTTCTTGATGCGGTCGGGGATGCCGGGCACGTTCTGGATGGAACCG 49702 Query 109639 CCAGCCTTCACCATGAGATCCTTCATC---TCTTTCGACCAGAGACCGACCTTTTTGAGA 109695 || | ||| | | ||||||| || ||| || || || || ||| Sbjct 49701 CCGTGGGCGATGATGCGGTTCTTCATCGTGTCGTTCCACAAG---CCCTGCTCGACGAGC 49645 Query 109696 TCGT----CAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAG 109751 ||| |||| | | | ||||||||| || ||||| || || || || Sbjct 49644 TCGCGGAGCAACCA-AGG---GTTGACCACCTGGAACTCACCGGCGAGCACACGACGCGA 49589 Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811 ||||||||| | ||||| || ||||| ||||| ||| || | ||| || || || Sbjct 49588 GTAGATGTTGGAGGTGTAAGGCTCGAAGCACTCGTTGAAACCCAAGATCTGACTGGTCGA 49529 Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTC 109871 || || ||||| ||||| | | || ||| || ||||| | | || | || Sbjct 49528 GGCAGTAGGCATAGGAGCGAGCAAGAGCGAGTTGCGAAGACCGTGC---TTGGCGATCTT 49472 Query 109872 ACGCATTGCGT----CCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATAT 109927 | || ||| | |||| || | | | | || | | | ||||||| | Sbjct 49471 A-GCCTTGAGCTCTGCCCAGTCCCAGAGGTC-CGAAGGCGTGACGC-----CCCACATGT 49419 Query 109928 CTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAA 109987 | || || |||||| | ||||| || || | | ||||||| | || | Sbjct 49418 CGTACTGCAGCTCACCCTGCGAGGCAGGCGAGCCAGCGTAGGTCTCGTAGGTGCCGTGCT 49359 Query 109988 CCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAG 110047 ||| |||| |||| | || || || || || || || || |||||||| || || Sbjct 49358 CCTGAGCCAGCTCGCACGATCGTTCGAGGGCAGCGTGGTAGATGGTCTCAAAGATCTGTA 49299 Query 110048 CATTCATGAGGCGAGACTCTTCACAGTCGAAGG-GAAGACCACAAAGAATAAACACATCC 110106 | || | | | |||| ||| | || |||| | || ||| | | | || | || Sbjct 49298 CGTTGAGGCGACGAGCCTCGGGCGACTCAAAGGCGTAGCCCATGATCA-TGAAGGCGTCG 49240 Query 110107 GCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTT 110166 || ||||| || ||||||| |||||||||||| || |||||| || | || || Sbjct 49239 GCGAGACCTTGGACACCGATACCAATGGGGCGGTGGCGCATGTTGGATCTGCGGGCCTCC 49180 Query 110167 TCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTG 110226 || || || || ||||| ||| |||| | ||||||||||| | | ||| | | Sbjct 49179 TCGACAGGATAGTAGTTGATGTCAATGATCTTGTTGAGATTCTTGCAGATGGCCTTGGCG 49120 Query 110227 ATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGA 110286 | || || | | | ||| ||||||| | | | || | | |||| || Sbjct 49119 ACGCTGTGAAGACGCTTGAAGTCGTACGTTTTGGCGACAGGGTCGATAAAGGTGGGCAGG 49060 Query 110287 GCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCC 110346 || || || || || ||||| || | | |||||| | || |||| || | || || Sbjct 49059 GCGATTGAGGCCAGGTTGCAGACGGCAACCTCGTCGGGGGCGCTGTACTCGATGATCTCG 49000 Query 110347 GTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCAT 110406 || ||||||||||| | ||| ||| || | ||||||||| || ||| |||| Sbjct 48999 GTGCACAAGTTGGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCA 48940 Query 110407 GCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTC 110466 || ||||| ||||| ||| | ||| | || || || ||||| ||| ||| ||||| | | Sbjct 48939 GCGTCCTTGTAGAGGATGAAGGGGTTGCCGGTCTCGGTCTGGCACTCGAGGATGGCGTAC 48880 Query 110467 CATA-CATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTA 110525 || | | || || || ||| ||| || | | |||| || ||||||| ||| Sbjct 48879 CAGAGCTTCTGC-GCCTTGACGGTTCGCTTGGAGCGACCCTCGGCCTCGTAGCGCTCGTA 48821 Query 110526 CAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGC-CTTGTCGGGACAGA 110584 | | |||||| || | ||||| || | ||| ||| || || || ||| || | Sbjct 48820 GAGGCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGA-CCTGGGCACTCGTTGGGGCACA 48762 Query 110585 AGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCG 110644 ||| ||||| | || || ||| |||||||||||||| || || || | ||| | | Sbjct 48761 TGAGCGACCAGTCGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCGGGGACCCAGAGGG 48702 Query 110645 CCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAA 110704 | |||| || |||||| ||| |||||| | || ||||| ||| || || | | Sbjct 48701 CGTAGAAGAGCTCACGGGCACGCATCTCTTCCTTGCCGTGGTTTTTGCGGAGATCGAGGA 48642 Query 110705 AGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG---AC 110761 | || | || ||||||||||||||| || | |||| || | || ||| ||| Sbjct 48641 ACTCAAAGACATCCGAGTGCCATGGCTCAATGTAGATGGCAAAGGCACCCGGACGCTTGT 48582 Query 110762 GACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTC 110821 || |||||| || ||||| || ||| || ||||| | |||||| || | || | Sbjct 48581 TGCCACCCTGGTCGACGTAGCGGGCAGTGTTGTTAAAGACGCGGAGCATGGGTACGATAC 48522 Query 110822 CAT--CGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGAT 110879 | | | || ||| || || || || || | | |||||| |||||| Sbjct 48521 CGTTACTGA--CACCGTTGGTGCCGGCGATGTACGAGCCGGTACCGCGAATGCAGTGGAT 48464 Query 110880 ATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACAC-TCTGTGAGTGTACCAT 110938 | | ||| |||||||| || ||| || |||||| ||| |||| || | | Sbjct 48463 GTTGAGACCGATACCACCGGCGGTCTTGGAGATCATGGCACACGTCT-TGAGCGTGTCGT 48405 Query 110939 AAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGAC 110998 | || || || ||||| || |||| ||| | || ||||| || || | ||| || Sbjct 48404 AGATGCCGTCGATCGAGTCGTCCTTCATGGTGACCAGGAAGCACGACGAGAGCTGTGGGT 48345 Query 110999 GAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGACATCT 111058 | || || || || |||||||| || || | || || | || |||||||| Sbjct 48344 GTGGTGTACCAGCGTTGAAGAGGGTGGGCGAGGCGTGGGTAAAGTATTTCTGGGACATGA 48285 Query 111059 TGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCA 111118 ||||| || |||| ||| | |||| |||||| || |||| || || |||| Sbjct 48284 GATTGTAAGTCTCGATGGCGCTCTCGATGTCTTGACCGTGGATGCCAACAGCGACACGCA 48225 Query 111119 TGAACATATATTGAGG 111134 ||| ||| | |||||| Sbjct 48224 TGAGCATGTGTTGAGG 48209 >seq33 Length=165040 Score = 129 bits (142), Expect = 7e-25 Identities = 331/491 (67%), Gaps = 21/491 (4%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || |||||||| ||||| || | || || | || || | ||| ||||| ||| || Sbjct 86570 CGGTCGAAACGTCCTGGTCGCATCAGCGCCGCGTCGAGCACATCTGGTCGGTTAGTACCG 86511 Query 11563 GCAATGACTACAA--TGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGT 11620 |||| || || | ||| ||| || ||||||||||||| | ||| | | || Sbjct 86510 GCAAGCACGACGACATGCTC--CTCGGTGCCGAAACCGTCCATCTGGACGAGCAATTCGT 86453 Query 11621 TGATCGTCTGTTCACGCTCATCGTTGGAGGGCA---TACCACCT--GCCGAACGCTTCTT 11675 ||| |||| |||||||||||| ||| | | || ||| ||| ||| |||| Sbjct 86452 TGAGCGTCGATTCACGCTCATCATTGCCTCCAAAGTTTCCGCCTTTGCC--ACGACTCTT 86395 Query 11676 ACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTC 11735 ||||| |||||| ||||| ||||| || | ||| || || || | | || | ||| Sbjct 86394 ACCGATAGCGTCGATCTCGTCGATAAAGATGATGCAAGGAGCGT-GCTTCTTGGC-GTTG 86337 Query 11736 GAAAAGTT--CACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCG 11793 | ||| | |||| || || | | || ||||| || ||||| || ||||| | | Sbjct 86336 GCAAACATGTCACGCACTCGGCTAGGGCCGACACCGACAAACATTTCGACGAATTCGGAA 86277 Query 11794 GCAGAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGT 11852 | || || || | ||| ||||| | | || |||||| | ||| || || || || Sbjct 86276 CCCGAG-ACGGACAAGAACGGAACTTGGGCTTCGCCAGCGGTCGCTTTGGCCAGCAGCGT 86218 Query 11853 CTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCA--CTT 11910 |||||| ||||| || | ||||| ||| | ||||||||||||||||| |||||| ||| Sbjct 86217 CTTACCGGTACCGGGAGGACCAGAGAGGATAGCGCCACGGGGGATCTTTGCACCAAGCTT 86158 Query 11911 CCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCG 11970 | || ||||||||||||||||||| || | ||| | || |||||||| Sbjct 86157 TTCA--TACTTTTCAGGCTTCTTGAGGAAGTTGACGAATTCCATGATCTCTTCCTTGGCC 86100 Query 11971 GAGTCGATACC 11981 ||| ||||| Sbjct 86099 TCGTCCATACC 86089 >seq21 Length=224232 Score = 107 bits (118), Expect = 2e-18 Identities = 172/244 (70%), Gaps = 5/244 (2%) Strand=Plus/Plus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || ||||| || || || || ||||||||||| || |||| ||| || Sbjct 32411 GGCAAAGTCGGTGTGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGACC 32470 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 |||||||| || | ||||| ||||| ||||||| ||| || || |||||||| Sbjct 32471 GGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGATGCAAAGGAGCCCGAGAAGAAGAT 32530 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTC---GA 119670 |||||| || ||||||||| | |||||||| || |||||| | | | |||| || Sbjct 32531 GCCCTCGACGGCGGCGAAAGCAACGAGACGCTCGGC-AAAGGTGGCGCGCCTGTCGCTGA 32589 Query 119671 ACCACTTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGA 119730 ||| |||||||||| |||||| ||| | | ||||| || | || ||| || | Sbjct 32590 TCCATCGAAGAGCCCAGTCGGCCTTCTGCTTGACGACGGGGATGGTCTCGACGGCGTCAA 32649 Query 119731 AAAG 119734 | || Sbjct 32650 AGAG 32653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588932327429600