Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq4 257 2e-63 seq21 100 3e-16 seq62 96.9 4e-15 >seq4 Length=437454 Score = 257 bits (284), Expect = 2e-63 Identities = 906/1396 (65%), Gaps = 37/1396 (3%) Strand=Plus/Minus Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 105994 |||||||| | ||||| || || ||||| || || ||||||||| || ||| ||| Sbjct 49587 TAGATGTTGGAGGTGTAAGGCTCGAAGCACTCGTTGAAACCCAAGATCTGACTGGTCGAG 49528 Query 105995 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCC 106054 || || ||||| || || | ||| || ||| |||||||| | | ||| || Sbjct 49527 GCAGTAGGCATAGGAGCGAGCAAGAGCGAGTTGCGAAGACCGTGCTTGGCGATCTTAGCC 49468 Query 106055 TTGAGAACATCCCAGTCGTAGTTGAGCTT-GGTTTCACCTTCCCACATATCAAATTGAAG 106113 ||||| | ||||||| || | | || | || ||||||| || | || || Sbjct 49467 TTGAGCTCTGCCCAGTCCCAGAGGTCCGAAGGCGTGACGC-CCCACATGTCGTACTGCAG 49409 Query 106114 CACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAA 106173 | | || || || | || || || | | ||||| |||| || || | | ||||| Sbjct 49408 CTCACCCTGCGAGGCAGGCGAGCCAGCGTAGGTCTCGTAGGTGCCGTGCTCCTGAGCCAG 49349 Query 106174 TTCACA-GCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCT 106232 || || | ||| || |||| ||||| || ||||| |||||||| | | || | Sbjct 49348 CTCGCACGATCGT-TCGAGGGCAGCGTGGTAGATGGTCTCAAAGATCTGTACGTTGAGGC 49290 Query 106233 CCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTT 106292 || || || ||||| ||||||| | || || | || |||||||||| Sbjct 49289 GACGAGCCTCGGGCGACTCAAAGGCGTAGCCCATGATCATGAAGGCGTCGGCGAGACCTT 49230 Query 106293 GAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGAT 106352 | ||||| | |||||| || | ||| ||||| || || | || || ||| || |||| Sbjct 49229 GGACACCGATACCAATGGGGCGGTGGCGCATGTTGGATCTGCGGGCCTCCTCGACAGGAT 49170 Query 106353 AAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAA 106412 | | || ||||||||| ||| ||||| ||| | ||| | || |||| Sbjct 49169 AGTAGTTGATGTCAATGATCTTGTTGAGATTCTTGCAGATGGCCTTGGCGACGCTGTGAA 49110 Query 106413 GTTTTTCATAATCAAAAGT----GCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATT 106468 | | | || | || |||| | | || | | | || ||||||||| Sbjct 49109 GACGCTTGAAGTCGTACGTTTTGGCGA----CAGGGTCGATAAAGGTGGGCAGGGCGATT 49054 Query 106469 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAC 106528 || |||| ||||| || || ||| || | ||||||| | || || || ||| Sbjct 49053 GAGGCCAGGTTGCAGACGGCAACCTCGTCGGGGGCGCTGTACTCGATGATCTCGGTGCAC 48994 Query 106529 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCC 106588 |||||||| | ||| || || || | ||||| ||||| ||||| |||| || ||| Sbjct 48993 AAGTTGGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCGTCC 48934 Query 106589 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-C 106647 |||||||| ||| |||| | || ||||| ||||| ||| ||| || || | ||| | | Sbjct 48933 TTGTAGAGGATGAAGGGGTTGCCGGTCTCGGTCTGGCACTCGAGGATGGCGTACCAGAGC 48874 Query 106648 ATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGC 106707 || ||| || | || | |||| || ||||| |||||||| ||||||| Sbjct 48873 TTCTGCGCCTTG-ACGGTTCGCTTGGAGCGACCCTCGGCCTCGTAGCGCTCGTAGAGGCG 48815 Query 106708 TTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGA 106767 |||||||| || || ||||| ||||||||| || || || || | || || Sbjct 48814 CTCAAACTCGTCGCCGTAGCAGTCGGCGAGACCTGGGCACTCGTTGGGGCACATGAGCGA 48755 Query 106768 CCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAA 106827 ||| | || || ||| |||| ||||||||| || || || | ||| |||| | || Sbjct 48754 CCAGTCGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCGGGGACCCAGAGGGCGTAGAA 48695 Query 106828 GAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCAT 106887 ||| || | || |||||| | || ||||| || | || |||||||| | Sbjct 48694 GAGCTCACGGGCACGCATCTCTTCCTTGCCGTGGTTTTTGCGGAGATCGAGGAACTCAAA 48635 Query 106888 GATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CC 106941 || ||||| |||||||||||||| |||| || | | ||| ||||| || Sbjct 48634 GACATCCGAGTGCCATGGCTCAATGTAGATGGCAAAGGCACCC---GGACGCTTGTTGCC 48578 Query 106942 AGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCAT- 107000 | | || | || ||||| || ||| |||||| ||||| ||||| || | ||||| | Sbjct 48577 ACCCTGGTCGACGTAGCGGGCAGTGTTGTTAAAGACGCGGAGCATGGGTACGATACCGTT 48518 Query 107001 -CTGATTGACCATTTGT-CCCCCGA-ATACGAGATTTATTGGCTCTCACAT-CA-TGGAT 107055 |||| ||| || || || ||| |||||| | | | || || ||||| Sbjct 48517 ACTGA--CACCGTTGGTGCCGGCGATGTACGAG----CCGGTACCGCGAATGCAGTGGAT 48464 Query 107056 GTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATA 107115 || | || ||||| || || ||| ||||| |||||| | | || || | || Sbjct 48463 GTTGAGACCGATACCACCGGCGGTCTTGGAGATCATGGCACACGTCTTGAGCGTGTCGTA 48404 Query 107116 GATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCT 107175 ||| |||| ||| ||||| ||||| ||| || |||||||| || | ||| || Sbjct 48403 GATGCCGTCGATCGAGTCGTCCTTCATGGTGACCAGGAAGCACGACGAGAGCTGTGGGTG 48344 Query 107176 TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAA-CATACCTTGGGACATCT 107234 |||||||||||| ||||||||||| || | ||||| | || || | |||||||| Sbjct 48343 TGGTGTACCAGCGTTGAAGAGGGTGGGCGAGGCGTGGGTAAAGTATTTC-TGGGACATGA 48285 Query 107235 TGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCA 107294 | ||| ||||| | | | || ||||||| ||||||||||| | || ||||||| Sbjct 48284 GATTGTAAGTCTCGATGGCGCTCTCGATGTCTTGACCGTGGATGCCAACAGCGACACGCA 48225 Query 107295 TAAACATGTATTGGGG 107310 | | ||||| ||| || Sbjct 48224 TGAGCATGTGTTGAGG 48209 >seq21 Length=224232 Score = 100 bits (110), Expect = 3e-16 Identities = 236/344 (69%), Gaps = 18/344 (5%) Strand=Plus/Plus Query 117099 GAGACGATCCGACACATACTCAATGTACTCGGACAT---CTTCTCAGAGTTCATACCGAT 117155 |||||| || | ||| ||||||||||||| | |||| ||||| |||||| || || Sbjct 32237 GAGACGGTCAGCCACGTACTCAATGTACTGGCACATGGCCTTCTG---GTTCATGCCAAT 32293 Query 117156 GAGAT-TACATGGGAGTGCGTC---CAAGATGAACCCTTTCTCAATCTCAACCGCCTCTT 117211 ||| ||| | || | || ||||| || ||||| || || || || ||||| Sbjct 32294 GAGCGCTACGGGCAAGCTC-TCTGTCAAGA--AAGCCTTT-TCGATTTCGACGGCCTCGC 32349 Query 117212 TCACGATGGCGTGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCT-TGAAGAGCTCC 117270 | | ||| | ||| ||| |||| ||||| | | | || |||||||| Sbjct 32350 TGATGATCTTGAGGACAGTGTCGGG-GTGGGCGCGCTTCTTGAGGTGGCTGAAGAGCAAG 32408 Query 117271 ACGGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGG 117330 |||||| || ||| |||||||| || ||||| || || || || |||||| || Sbjct 32409 CAGGCAAAGTCGGTGTGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGA 32468 Query 117331 CCTGGCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAA 117389 || ||||||||||| |||||||| | ||| | || | ||| || || || |||||||| Sbjct 32469 CCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGATGCA-AAGGAGCCCGAGAAGAA 32527 Query 117390 GATACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGG 117433 ||| ||||| || || || |||| || |||||||| |||| Sbjct 32528 GATGCCCTCGACGGCGGCGAAAGCAACGAGACGCTCGGCAAAGG 32571 >seq62 Length=112892 Score = 96.9 bits (106), Expect = 4e-15 Identities = 194/288 (67%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 169178 GATGAGACCCTTGATGTGAGAACCATCATTATCGGCATCTGTCATAATCATAAGACGACC 169237 |||||||||||||||||| ||||| || | ||| ||| ||||| ||||| | | || Sbjct 20058 GATGAGACCCTTGATGTGCGAACCGTCGTGATCCTGATCGGTCATGATCATGATGCTGCC 20117 Query 169238 ATAGCGAAGTTCAGAAACATCTTGGTAGTCTTTTCCTTGTTGAAGACCCAAGATCTTCTT 169297 || || || || || |||| | || || || |||||||||| ||| | ||| Sbjct 20118 GTAACGCAGGCTGTTGACGTCGAGGTACTGCTTGCCGTGCTGAAGACCCAGGATTTCCTT 20177 Query 169298 GAGATCGTTGAACTCTTGGTTTGATGTGAGCTGTGCCACTGAAGCGTCGCGGACATTCTT 169357 || | |||| || |||| ||| ||| | || || |||||||| || Sbjct 20178 GATTGCCTTGATTTCGGCGTTTTTCATGATCTGGTCGTGCGATGCCTCGCGGACGTTGAG 20237 Query 169358 ACACTTCCCACGGAGAGGAAAGACGCCATAGTGATCACGTCCAACGACGGAGAGACCCGC 169417 | ||| || || || || || || || |||| || | ||| || || || ||| || Sbjct 20238 AAGCTTACCGCGAAGGGGGAATACTCCGTAGTTGTCCCTTCCGACCTCGACGATACCGGC 20297 Query 169418 GACCGCAAGGGTTTTCGCTGAATCACCCTCCGTGACAATGAGGGTACA 169465 || ||||| | ||| || || |||||||| |||| |||||| || || Sbjct 20298 AACGGCAAGCGATTTGGCCGAGTCACCCTCGGTGAGAATGAGTGTGCA 20345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589937052923680