Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq27 93.3 5e-14 >seq27 Length=191231 Score = 93.3 bits (102), Expect = 5e-14 Identities = 133/185 (72%), Gaps = 2/185 (1%) Strand=Plus/Minus Query 154933 AGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGG 154992 ||||| | || ||||| ||||||||||| || || ||||| || ||||| | || |||| Sbjct 11245 AGATCATCCACGACAACGGTGGTCAGGTGTACCTGGATGGCGCCAATCTCCAGGCCCAGG 11186 Query 154993 TAGGACTAGCAAAACCATGTGAGTATGG-TGCAGATGTATGTCATCTAAACTTACATAAA 155051 ||| || | || || | | |||| ||| ||||| ||| | ||||| || || Sbjct 11185 TAGCGCTCACCAATCCGGCT-ATCATGGGTGCGGATGTGACCCATTTGAACTTGCACAAG 11127 Query 155052 ACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGTAGCAAAA 155111 || |||| ||||| ||||| || ||||||||||| || ||||| || | || || | Sbjct 11126 ACCTTCTCGATTCCTCATGGTGGAGGAGGTCCTGGTGTCGGTCCCATCTGCGTCGCCGAG 11067 Query 155112 CATCT 155116 ||||| Sbjct 11066 CATCT 11062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579169851370880