Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq10 161 2e-34 seq67 156 9e-33 seq18 127 5e-24 >seq10 Length=322828 Score = 161 bits (178), Expect = 2e-34 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || ||||| ||||| |||| | ||| | ||||| ||| Sbjct 156358 ACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAAAGTGCGGCCATCCTCG 156417 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| ||||| || ||||| || ||||||||||| ||||| ||| Sbjct 156418 AGCTGCTTTCCAGCAAAGATGAGTCGCTGCTGGTCAGGTGGAATGCCTTCCTTGTCCTGA 156477 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || ||||||||||| ||| || || || || | |||||| Sbjct 156478 ATCTTGGCCTTGACGTTGTCGATGGTGTCCGACGATTCGACCTCGAGAGTGATCGTCTTG 156537 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || || || | ||||| Sbjct 156538 CCGGTCAAGGTCTTGACAAAGATCTGCAT 156566 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || ||||| ||||| || | ||| || | || || ||| Sbjct 83719 ACGAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCG 83660 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| || ||||| || || || ||||| || || || || || ||||| || Sbjct 83659 AGCTGCTTACCGGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGG 83600 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || || |||||||||||| || || || ||||| | ||||| Sbjct 83599 ATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATGGTCTTA 83540 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || || || | ||||| Sbjct 83539 CCCGTGAGGGTCTTGACAAAGATCTGCAT 83511 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || || |||||||| | || || | || |||||| Sbjct 156586 ACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCAGAGAGCGTGCGGCCGTCTTCG 156645 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| ||||| || || || || ||||| || || || || || Sbjct 156646 AGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGATCAGGTGGAATACCCTCCTTATCCTGG 156705 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| ||||||||||| || || || || ||||| | ||||| Sbjct 156706 ATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTG 156765 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||| || || || | ||||| Sbjct 156766 CCCGTGAGAGTCTTGACAAAGATCTGCAT 156794 >seq67 Length=99859 Score = 156 bits (172), Expect = 9e-33 Identities = 166/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||||| ||| ||||||||||| || || || || ||||| ||||| || | || || | Sbjct 38100 GAGTCGCAAGACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCCGAGAGGGTGCG 38159 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 || || ||||||||||| ||||| ||||| || || || || || ||||||||||| || Sbjct 38160 GCCGTCCTCGAGCTGCTTGCCTGCAAAGATGAGACGCTGCTGATCAGGAGGAATGCCCTC 38219 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 ||||| || || || ||||||||| || || ||||||||| ||| || || ||||| Sbjct 38220 CTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAAGATTCGACCTCGAGGGT 38279 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || ||||| || || || || | ||||| Sbjct 38280 AATGGTCTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 38318 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| | |||| ||| || ||||| ||||| || | || || | || ||||| Sbjct 37882 ACGAGGTGCAAAGTGCTCTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGACCGTCTTCC 37941 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| || ||||| | || || ||||| || || || ||||| ||||| || Sbjct 37942 AGCTGCTTACCGGCAAAGATCAAGCGCTGCTGGTCAGGTGGGATACCTTCCTTGTCCTGG 38001 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| ||||| ||||||||| || ||||| | |||| ||||||| Sbjct 38002 ATCTTGGCCTTGACGTTGTCAATCGTGTCCGAAGACTCGACTTCCAACGTAATCGTCTTT 38061 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || ||||| || | ||||| Sbjct 38062 CCCGTGAGTGTCTTTACAAAGATCTGCAT 38090 Score = 118 bits (130), Expect = 2e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || || || || || || || ||||| || | || || | || || ||||||||| Sbjct 38344 TGGAGGGTCGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCGTCCTCGAGCTGC 38403 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || |||||||| || ||||| || || ||||||||||| || ||||| || || || Sbjct 38404 TTTCCAGCGAAGATGAGGCGTTGCTGATCGGGAGGAATGCCCTCCTTGTCCTGGATCTTG 38463 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||||||||| || || ||||| ||| || || || ||||| | ||||| || ||| Sbjct 38464 GCCTTGACGTTGTCGATCGTGTCGGAAGACTCTACCTCGAGGGTGATGGTCTTACCAGTC 38523 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | ||| || || || | ||||| Sbjct 38524 AGAGTCTTGACAAAGATCTGCAT 38546 >seq18 Length=237310 Score = 127 bits (140), Expect = 5e-24 Identities = 139/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || || ||||| || || || ||||| || | || || | || || ||| Sbjct 132602 ACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCG 132543 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || || || ||||| || || || || || ||||| ||| Sbjct 132542 AGCTGCTTTCCGGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGA 132483 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || || ||||||||||| ||||| |||||||||| ||||| Sbjct 132482 ATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCCACCTCAAGGGTAATGGTCTTA 132423 Query 195112 CCTGT 195116 ||||| Sbjct 132422 CCTGT 132418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109397275237844