Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq67 107 1e-18 seq10 89.7 4e-13 >seq67 Length=99859 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 48570 GTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCG 48629 |||||||| || ||||| ||||| || || || | ||| |||| |||| |||||||||| Sbjct 37894 GTGCTCTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGACCGTCTTCCAGCTGCTTACCG 37953 Query 48630 GCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTT 48689 ||||| |||| ||||| || || | || | || |||||||| ||||| || Sbjct 37954 GCAAAGATCAAGCGCTGCTGGTCAGGTGGGATACCTTCCTTGTCCTGGATCTTGGCCTTG 38013 Query 48690 ACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTT 48749 || | | | || || | ||| || |||| ||||||||| |||||||| | || Sbjct 38014 ACGTTGTCAATCGTGTCCGAAGACTCGACTTCCAACGTAATCGTCTTTCCCGTGAGTGTC 38073 Query 48750 TTTACAAAAATCTGCAT 48766 |||||||| |||||||| Sbjct 38074 TTTACAAAGATCTGCAT 38090 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 48570 GTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCG 48629 |||||||| || ||||| |||||||| || ||| | ||| | || |||||||||||||| Sbjct 37666 GTGCTCTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGACCATCTTCCAACTGCTTACCA 37725 Query 48630 GCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTT 48689 ||||| ||||| ||||| || || | || | ||||||||||| ||||| || Sbjct 37726 GCAAAGATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCCTGGATCTTGGCCTTG 37785 Query 48690 ACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTT 48749 || | | | || || | ||| || |||| || || ||||| || || | || Sbjct 37786 ACGTTGTCAATCGTGTCCGAAGACTCGACTTCCAATGTGATGGTTTTGCCAGTGAGCGTC 37845 Query 48750 TTTACAAAAATCTGCAT 48766 || ||||| |||||||| Sbjct 37846 TTGACAAAGATCTGCAT 37862 >seq10 Length=322828 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || ||||| ||||| || || || | || |||| || | ||||||||||||||| Sbjct 83702 CTCCTTCTGAATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCGAGCTGCTTACCGGCAAA 83643 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 ||||| ||||| || || | ||| | ||||||||||| ||||| || ||| Sbjct 83642 GATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATT 83583 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || | ||| ||||| | || || || || ||||| | || || || Sbjct 83582 GTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGAC 83523 Query 48755 AAAAATCTGCATCGTGT 48771 ||| ||||||||| ||| Sbjct 83522 AAAGATCTGCATCTTGT 83506 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || ||||| ||| || || || ||||||||||| || | || |||| || | |||| Sbjct 156592 TGGAGCGTCGACTCCTTCTGGATGTTGTAATCAGAGAGCGTGCGGCCGTCTTCGAGCTGC 156651 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || |||||||| || |||||||| ||||| | |||| |||||||| || ||||| Sbjct 156652 TTGCCGGCAAAGATGAGTCGCTGCTGATCAGGTGGAATACCCTCCTTATCCTGGATCTTG 156711 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || || | | | || || | ||| ||||| | || || || || ||||| Sbjct 156712 GCCTTGACGTTGTCAATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTG 156771 Query 48744 AAAGTTTTTACAAAAATCTGCATC 48767 | ||| || ||||| ||||||||| Sbjct 156772 AGAGTCTTGACAAAGATCTGCATC 156795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380910059640036