Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq4 446 3e-120 seq21 223 6e-53 >seq4 Length=437454 Score = 446 bits (494), Expect = 3e-120 Identities = 1283/1949 (66%), Gaps = 82/1949 (4%) Strand=Plus/Minus Query 212576 AGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTTAGGCCCTTGCCCCAGCCGTGCAT 212635 ||||| ||||||||| || ||||| | |||||||| || ||||| |||||||| | Sbjct 49945 AGCAGGCTTGGTGCGCAGGTAGTAGGTACCGGTCTTGAGACCCTTCTTCCAGCCGTAGAA 49886 Query 212636 GTGCATTGCTGTGAGTTTCTTCAGCTTAATATTCTGGTC-ATCCTCGTGGCCCAGA--TG 212692 |||||| | ||||| |||| | | | | | ||| ||| || Sbjct 49885 GTGCATCGAGGTGAG------------------CTGGCCGAACGTGGGCGCCGAGAGATG 49844 Query 212693 TAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGAT 212752 | ||| || ||||| |||| ||||| | | | ||| ||||||||||| ||||| Sbjct 49843 GATGTTGAGCGACTGCGACTGGCAGATGAAGGCACCGCGGTCGGCGGCCATGTCGATGAT 49784 Query 212753 ATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCC 212812 | ||||| || |||||| ||||||||| ||| | |||| | || |||| ||| Sbjct 49783 GGCCTTCTGGCTGATCTCCCAGACGGTCTTGTAGAGCTTCTTGATGCGGTCGGGGATGCC 49724 Query 212813 GGGGATGTTCTGCACAGACCCCCTGTGTATGGTCAGCTGCAGGCG--CATGTCCTCGTTC 212870 ||| | |||||| | || || | ||| | | | ||| | ||| |||||| Sbjct 49723 GGGCACGTTCTGGATGGAACCGCCGTGGGCGATGA--TGCGGTTCTTCATCGTGTCGTTC 49666 Query 212871 CAGAGGCCCCTGGTCTCCAGGCACTTG-ACCAGGTGAGGGTTGACTATCTGGAAGTCACC 212929 || | |||| || || | || | | | || ||||||||| | |||||| ||||| Sbjct 49665 CACAAGCCC-TGCTCGACGAGCTCGCGGAGCAACCAAGGGTTGACCACCTGGAACTCACC 49607 Query 212930 TGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCC 212989 | |||||| | | | ||| | ||| || ||||| ||||||| || ||||||| || Sbjct 49606 GGCGAGCACACGACGCGAGTAGATGTTGGAGGTGTAAGGCTCGAAGCACTCGTTGAAACC 49547 Query 212990 CAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCC 213049 || ||||| || ||| || ||||| ||||| | || ||| ||| | | || Sbjct 49546 CAAGATCTGACTGGTCGAGGCAGTAGGCATAGGAGCGAGCAAGAGCGAGTTGCGAAGACC 49487 Query 213050 GTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTC 213109 ||||| | |||| | ||||||||||||||||| | | || ||| Sbjct 49486 GTGCTTGGCGATCTTAGCCTTGAGCTCTGCCCAGTCCCAGAGGTCCGA-AGG-------- 49436 Query 213110 CTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTG-GTAAG 213168 | | ||| ||||||||| |||||| | | | ||| ||| || | ||| | Sbjct 49435 CGTGACGCCCCACATGTCGTACTGCA-GCTCACCCTGCGAGGCAGGCGAGCCAGCGTAGG 49377 Query 213169 AGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGA 213228 ||||| ||| ||||||| ||||||||||| || | |||||||||| ||||| Sbjct 49376 TCTCGTAGGTGCCGTGCTCCTGAGCCAGCTCGCACGATCGTTCGAGGGCAGCGTGGTAGA 49317 Query 213229 TGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCAT----C 213284 |||| ||||| |||| |||||| ||||| || ||| | || ||| | | Sbjct 49316 TGGTCTCAAAGATCTGTACGTTGAGGCGACGAGCCTCGGGCGAC-TCAAAGGCGTAGCCC 49258 Query 213285 ATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTC 213344 || || | | ||| | || || || || ||||| ||||| || ||||| | ||| | | Sbjct 49257 ATGAT-CAT--GAAGGCGTCGGCGAGACCTTGGACACCGATACCAATGGGGCGGTGGCGC 49201 Query 213345 AGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGG 213404 | ||| || || | |||||| | || || ||||| ||| |||||||||||||| Sbjct 49200 ATGTTGGATCTGCGGGCCTCCTCGACAGGATAGTAGTTGATGTCAATGATCTTGTTGAGA 49141 Query 213405 TT---GCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGA--TTGAACACGTAGC 213459 || || | ||||| |||| ||| | || || | ||| | | || | | Sbjct 49140 TTCTTGCAGATGGCC---TTGGCGACGCTGTGAAG--ACGCTTGAAGTCGTACGTTTTGG 49086 Query 213460 CCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCT 213519 | | | | ||| ||||||||||| |||||||||||| ||||| ||||| | Sbjct 49085 CGACAGGGTCGATAAAGGTGGGCAGGGCGATTGAGGCCAGGTTGCAGACGGCAACCTCGT 49026 Query 213520 GAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGT 213579 | | | ||||||| |||||||||||||||| |||| ||| ||||||||| |||| Sbjct 49025 CGGGGGCGCTGTACTCGATGATCTCGGTGCACAAGTTGGAGCACTTGATGGTGCCGAGGT 48966 Query 213580 TCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCT 213639 ||| ||||| ||| |||||||| ||||||||||| ||| ||||| ||||||| Sbjct 48965 TCTTCTGGTTGCTCTTGCGGTTGGCAGCGTCCTTGTAGAGGATGAAGGGGTTGCCGGTCT 48906 Query 213640 CTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAG 213699 | |||| || | || || | |||||| | | |||||||| ||| || || Sbjct 48905 CGGTCTGGCACTCGAGGATGGCGTACCAGAGCTTCTGCGCCTTGACGGTTCGCTTG-GAG 48847 Query 213700 CTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGT 213759 | | || |||||||| | |||||||| | || |||| ||| || | Sbjct 48846 CGACCCTCG--GCCTCGTAGCGCTCGTAGAGGCGCTCAAACTCGTCGCCGTAGCAGTCGG 48789 Query 213760 CCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCG-TCATCTCTGACTCTC 213818 | || || || || ||| |||||||| |||||| ||| || ||| ||| ||| Sbjct 48788 CGAGACCTGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTC-GACCCTC 48730 Query 213819 TGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCC 213878 | |||||| || || |||||||| || ||| ||| || || | || | | |||| ||| Sbjct 48729 TTCATGAAGAGATCGGGGACCCAGAGGGCGTAGAAGAGCTCACGGGCACGCATCTCTTCC 48670 Query 213879 ACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATG 213938 || ||||||||| ||||| || || ||||||| |||| |||||| ||||| ||| Sbjct 48669 TTGCCGTGGTTTTTGCGGAGATCGAGGAACTCAAAGACATCCGAGTGCCATGGCTCAATG 48610 Query 213939 TAGATGGCAAAGGCGCCCG---GCCTCTTGCCGCCCTGGTCCACCAGCCTGGCCACCATG 213995 |||||||||||||| |||| || | ||||| |||||||| || | ||| || Sbjct 48609 TAGATGGCAAAGGCACCCGGACGCTTGTTGCCACCCTGGTCGACGTAGCGGGCAGTGTTG 48550 Query 213996 TTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTG--TCCGTTGGTTCCCGCTATAT 214053 || |||| ||| || | |||||| | ||||| |||| |||||||| || || || | Sbjct 48549 TTAAAGACGCGGAGCATGGGTACGATACCGTT--ACTGACACCGTTGGTGCCGGCGATGT 48492 Query 214054 ACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGA 214113 ||||||||| | | | | | ||| ||| || || ||||||||| |||||||| Sbjct 48491 ACGAGCCGGTACCGCGAATGCAGTGGATGTTGAGACCGATACCACCGGCGGTCTTGGAGA 48432 Query 214114 TCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCA 214173 ||||||| || | | | || || ||||||| | || ||| || | | | | | Sbjct 48431 TCATGGCACACGTCTTGAGCGTGTCGTAGATGCCGTCGATCGAGTCGTCCTTCATGGTGA 48372 Query 214174 GCAAGAAGCAGCTCGAGAGCTG-GGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTG 214232 || |||||| ||||||||| ||| ||| | |||| |||||| || ||||| | Sbjct 48371 CCAGGAAGCACGACGAGAGCTGTGGGTGTGG-TGTACCAGCGTTGAAGAGGGTGGGCGAG 48313 Query 214233 GCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCG 214292 || ||| | | | || | || | ||| |||| ||||| | | | |||||| Sbjct 48312 GCGTGGGTAAAGTATTTCTGGGACATGAGATTGTAAGTCTCGATGGCGCTCTCGATGTCT 48253 Query 214293 TGCTTGTGGATCTGTAGAGCGCACCTCATCAGCATGTGCTGGGGCCTCTCTATGGGTCCT 214352 || |||||| | |||| | ||| |||||||| || || | ||| | | ||| Sbjct 48252 TGACCGTGGATGCCAACAGCGACACGCATGAGCATGTGTTGAGGACGCTC--AGCGACCT 48195 Query 214353 TTGGGGCCCTT------GAGCAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTAGGAG 214406 || || || |||||||||||| ||||| || |||||||| || ||| || | Sbjct 48194 TT----CCGTTGATGCGGAGCAGGTAGGAACGCTCGAGCGTCTTGAATCCGAAGAAGTTG 48139 Query 214407 TAGGTATGATCGTTCCCGTGTATGAGGGCAGCGTCCAGCTCTTCCGCGTGCTCTTGGCTC 214466 ||| |||| | | | |||| ||| | ||| |||| ||| |||||| | Sbjct 48138 TAGTGGAAATCGCGCTCATAGATGATGGCCGAGTCGAGCTGGTCCTTGTGCTCCATGACA 48079 Query 214467 AGCTTGAAAATCTCGTCCGAGATCAAGGG 214495 | |||| | | |||| ||||||| ||| Sbjct 48078 ACCTTGTAGGTGGCGTCGGAGATCATGGG 48050 >seq21 Length=224232 Score = 223 bits (246), Expect = 6e-53 Identities = 392/565 (69%), Gaps = 21/565 (4%) Strand=Plus/Plus Query 48123 AGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGA 48182 |||||| |||||||||||| |||| | || ||||| ||| ||||||| ||||||||| Sbjct 32401 AGAGCAAGCAGGCAAAGTCGGTGTGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGA 32460 Query 48183 AGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAG 48242 || ||||| ||||||| || | || ||||||||||| || | || || ||||| | Sbjct 32461 AGGTAAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGATGCAAAGGAGCCCG 32520 Query 48243 AGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCT 48302 |||||||||||||||| || || ||||| || ||| | ||| | || | ||| | Sbjct 32521 AGAAGAAGATGCCCTCGACGGCGGCGAAAGCAACGAGACGCTCGGCAAAGGTGGCGCGCC 32580 Query 48303 TGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTA 48362 |||| |||||| ||| |||||||| ||||||| ||||| | || || ||||| | Sbjct 32581 TGTCGCTGATCCATCGAAGAGCCCAGTCGGCCTTCTGCTTGACGACGGGGATGGTCTCGA 32640 Query 48363 TGGCCCGGAAGAGCTTCTTGCACTCAC-CTGC----GTCCGC-AACATA--GGTAG-TGA 48413 ||| ||||| | | |||| |||| || ||| || || || | ||| Sbjct 32641 CGGCGTCAAAGAG------GAATTCACGCTGCTCGGGTTCGCGAATGTACGAGTCGATGA 32694 Query 48414 GCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGG 48473 | ||| | ||| |||| ||||| | ||||| || ||||||||| ||||||||| Sbjct 32695 GGAGC---GAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGC 32751 Query 48474 CCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTA 48533 | |||||| |||| ||||| | | ||| | ||| | || ||||| ||||| | Sbjct 32752 AGCGGGCCTCGGCAGCCTGAACTTCGGAGCTGAAACGCTCGACTAGGTTCTCGTTGACGA 32811 Query 48534 TCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGG 48593 | || || ||||| || ||||| |||||||| || | || ||||||||||||| | Sbjct 32812 TACCGTCGGAAGCGGCGAAGAAAGCAAGGACGTGGGAGATAAAGTGGCGCTCGTTGTCGT 32871 Query 48594 TGAGAGCATT---CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGA 48650 |||| || |||| | || | || ||| ||||| | || || | ||||||| Sbjct 32872 TGAGCTTGTTGTCCCAGTCGTGAAGATCCTTGGAAAGGTCGATCTCCTCTGCGGTCCAGA 32931 Query 48651 AGGACGCGAGTGCTTTTTTGTACAT 48675 |||| || || || |||||||| Sbjct 32932 AGGAAGCCTCGGCCTTCTTGTACAT 32956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931463726842880