Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq4 331 2e-85 seq21 232 1e-55 >seq4 Length=437454 Score = 331 bits (366), Expect = 2e-85 Identities = 850/1272 (67%), Gaps = 33/1272 (3%) Strand=Plus/Minus Query 221366 CCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTCAGGGCA 221425 ||| |||| | |||||||| |||| | | ||| | |||| || | |||||| Sbjct 49386 CCAGCGTAGGTCTCGTAGGTGCCGTGCTCCTGAGCCAGCTCGCACGATCGTTCGAGGGCA 49327 Query 221426 GCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAAG 221485 |||||||||||||||||||||||| |||||| | |||||||| || | || Sbjct 49326 GCGTGGTAGATGGTCTCAAAGATCTGTACGTTGAGGCGACGAGCCTCGGGCGAC-TCAAA 49268 Query 221486 GGCATA-CGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCT 221544 ||| || | || ||| ||| ||||||| || || || || |||||||| ||||| | Sbjct 49267 GGCGTAGCCCATGATCATGAAGGCGTCGGCGAGACCTTGGACACCGATACCAATGGGGCG 49208 Query 221545 GTGTCTCCTGTTGGAA--GCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGA 221602 ||| | | ||||||| |||| | || || | || ||||| |||||| ||| || | Sbjct 49207 GTGGCGCATGTTGGATCTGCGGGC-CTCCTCG-ACAGGATAGTAGTTGATGTCAATGATC 49150 Query 221603 TTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACC 221662 |||||||| ||| |||| | || | || | || | | | ||||| | Sbjct 49149 TTGTTGAGATTCTTGCAGATGGCCTTGGCGACG-CTGTGAA-----GACGCTTGAAGTCG 49096 Query 221663 AACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTA 221722 || | || | |||| || | ||| | | ||||| | ||||||||| Sbjct 49095 TACGTTTTGGCGAC----AGGG--TCGATAAAGGTGGGCAGGGCGATTGAGGCCAGGTTG 49042 Query 221723 CACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCAC 221782 || ||||| |||||||| | | | |||| |||||||| || || | |||| |||| Sbjct 49041 CAGACGGCAACCTCGTCGGGGGCGCTGTACTCGATGATCTCGGTGCACAAGTTGGAGCAC 48982 Query 221783 TTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATA 221842 |||||||| || |||| || || || |||||| |||||||||||||||||||| || Sbjct 48981 TTGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCGTCCTTGTAGAGGATG 48922 Query 221843 AAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-GCGCT 221901 ||||| ||| ||||| ||| | | || || || |||||| | |||| || | Sbjct 48921 AAGGGGTTGCCGGTCTCGGTCTGGCACTCGAGGATGGCGTACCAGAGCT-TCTGCGCCTT 48863 Query 221902 CACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTT 221961 || || | |||| |||||||| || | | || ||||| ||||||| Sbjct 48862 GACGGTTCGCTTGGAGCGACCCTCGGCCTCGTAGCGCTCG---TAGAGGCGCTCAAACTC 48806 Query 221962 TTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTT 222021 || ||||| ||| | || ||||| ||| | ||| ||||| || ||||| Sbjct 48805 GTCGCCGTAGCAGTCGGCGAGACCTGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCC 48746 Query 222022 GTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCT 222081 ||| | | |||||||| ||||||||| || |||| ||| || || | ||||| || | Sbjct 48745 GTTCTGCTCGACCCTCTTCATGAAGAGATCGGGGACCCAGAGGGCGTAGAAGAGCTCACG 48686 Query 222082 GGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGC 222141 || ||| ||| ||| ||||| |||||| | ||||| | |||||||| | || | Sbjct 48685 GGCACGCATCTCTTCCTTGCCGTGGTTTTTGCGGAGATCGAGGAACTCAAAGACATCCGA 48626 Query 222142 GTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCAC 222201 |||||| ||||| | |||| ||| | || || || ||||||||||||||||| || | Sbjct 48625 GTGCCATGGCTCAATGTAGATGGCAAAGGCACCCGGACGCTTGTTGCCACCCTGGTCGA- 48567 Query 222202 CATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGT 222260 | | ||| | ||| |||| ||| || | ||||| | ||||| ||||| Sbjct 48566 CGTAGCGGGCAGTGTTGTTAAAGACGCGGAGCATGGGTACGATACCGTTACTGACACCGT 48507 Query 222261 TGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAG-ACATGCCGATACCA 222319 ||||||| ||||||| ||| | | | | | ||| | | ||||||||| Sbjct 48506 TGGTGCCGGCGATGTACGAGCCGGTACCGCGAATG-CAGTGGATGTTGAGACCGATACCA 48448 Query 222320 CCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAG 222379 |||||| || ||||||||||| || ||||||| ||||| |||||| || || ||| Sbjct 48447 CCGGCGGTCTTGGAGATCATGGCACACGTCTTGAGCGTGTCGTAGATGCCGTCGATCGAG 48388 Query 222380 TCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTG-AGATTTGGTGGAACAGGCGTT 222438 || ||||| | | | | ||| || || ||||| | ||| | | ||||| | || ||||| Sbjct 48387 TCGTCCTTCATGGTGACCAGGAAGCACGACGAGAGCTGTGGGTGTGGTGTACCA-GCGTT 48329 Query 222439 AAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCTAC 222498 || || ||||| |||||| |||||||| | ||||| |||| ||| ||||| | Sbjct 48328 GAAGAGGGTGGGCGAGGCGTGGGTAAAGTATTTCTGGGACATGAGATTGTAAGTCTCGAT 48269 Query 222499 GACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTGGGG 222558 | | || |||||| | ||||| || | ||| | |||| ||||| || || Sbjct 48268 GGCGCTCTCGATGTCTTGACCGTGGATGCCAACAGCGACACGCATGAGCATGTGTTGAGG 48209 Query 222559 CCTCTCCACAGGACCCTT--GGAGCTGGAGAGCAGGTACGATTTTTCCAGAGTCTTGAAC 222616 | ||| | |||| || | | || ||||||||| || || || |||||||| Sbjct 48208 ACGCTCAGC--GACCTTTCCGTTGATGCGGAGCAGGTAGGAACGCTCGAGCGTCTTGAAT 48151 Query 222617 CCAAAGTAGTTG 222628 || ||| ||||| Sbjct 48150 CCGAAGAAGTTG 48139 >seq21 Length=224232 Score = 232 bits (256), Expect = 1e-55 Identities = 566/857 (66%), Gaps = 30/857 (4%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||||||||| | || ||||||||| || ||||| || || Sbjct 32965 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCAGAGGAGATCGACCTT 32906 Query 25537 GCCAAGGACATGGACGGCTGGTAC-----GCTCTATCCAAAGACGAGCAGCATTTTCTCA 25591 ||||||| | ||| |||| || |||| | | | |||||| || ||| || Sbjct 32905 TCCAAGGATCTTCACGACTGGGACAACAAGCTCAA--CGACAACGAGCGCCACTTTATCT 32848 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651 |||| | || ||||| || || || || ||||| || |||||||| || |||| Sbjct 32847 CCCACGTCCTTGCTTTCTTCGCCGCTTCCGACGGTATCGTCAACGAGAACCTAGTCGAGC 32788 Query 25652 GATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCA 25711 | |||| | ||||| ||| | |||||| || ||||||||||||||||| | Sbjct 32787 GTTTCAGCTCCGAAGTTCAGGCTGCCGAGGCCCGCTGCTTCTACGGTTTCCAGATCATGA 32728 Query 25712 TCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT-GAC--GTACATTACAGACG 25768 | || || | ||||| ||| || | ||| || || ||| ||||||| || Sbjct 32727 TGGAGAACATCCACTCCGAGACCTACTC---GCTCCTCATCGACTCGTACATTCGCGAAC 32671 Query 25769 TCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGG 25828 || || | || || |||| ||| ||||| ||| ||| | ||||| ||||| Sbjct 32670 CCGAGCAGCGTGAATTCCTCTTTGACGCCGTCGAGACCATCCCCGTCGTCAAGCAGAAGG 32611 Query 25829 CGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAG 25888 | ||||| | ||||||| | | | |||| || |||| |||||| || || | Sbjct 32610 CCGACTGGGCTCTTCGATGGATCAGCGACAGGCGCGCCACCTTTGCCGAGCGTCTCGTTG 32551 Query 25889 CCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCA 25948 | || || || || ||||||||||| ||| || || ||||| ||||||||||||||| Sbjct 32550 CTTTCGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCCTTTGCATCCATCTTCTGGCTCA 32491 Query 25949 AGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGG 26008 || || || ||||||||| || ||| ||||||||||||||| | | ||||||| Sbjct 32490 AGAAGCGTGGTCTCATGCCCGGTCTTACCTTCTCCAACGAGCTCATCTCCCGTGACGAGG 32431 Query 26009 GTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTC 26068 |||| |||| || ||||||||| |||||| || ||||| ||| | || | | | Sbjct 32430 GTCTTCACACCGACTTTGCCTGCTTGCTCTTCA---GCCAC---CTCAAGAAGCGCGCCC 32377 Query 26069 A---AGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNN 26125 | || || ||| || ||||||| ||||| || || ||||| |||| || Sbjct 32376 ACCCCGACACTGTCCTCAAGATCATCAGCGAGGCCGTCGAAATCGAAAAGGCTTTCTTGA 32317 Query 26126 NNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTG 26185 | ||||||||| | | |||| |||| ||||||| Sbjct 32316 CAGAGAGCTTGCCCGTAGCGCTCATTGGCATGAACCAGAAGGCCATGTGCCAGTACATTG 32257 Query 26186 AGTATGTGGCCGACCATCTGCTG--TGCCAGCTGGGACTCGCCAGACTCTACAGTACGCC 26243 |||| ||||| |||| ||| || | || || ||| | | | |||| | |||| Sbjct 32256 AGTACGTGGCTGACCGTCTCTTGGTTTCC--CTCGGAAACCCGGTCCACTACGG--CGCC 32201 Query 26244 TAA--CCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAA 26301 | ||| |||||||||||| || ||| || |||| ||||||||||||||||| Sbjct 32200 ACATGCCCATTCGACTTTATGACGTCGATCTCGCTGCAAGGTAAGACCAACTTCTTTGAG 32141 Query 26302 AAGAGGGTCGGCGACTA 26318 |||| ||||| ||| || Sbjct 32140 AAGAAGGTCGCCGAATA 32124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928775926158080