Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq4 228 1e-54 seq62 114 2e-20 seq21 100 3e-16 >seq4 Length=437454 Score = 228 bits (252), Expect = 1e-54 Identities = 914/1417 (65%), Gaps = 39/1417 (3%) Strand=Plus/Plus Query 75219 ACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTCTTGGAGA 75278 ||||| ||||||| ||||| | ||||||||||| ||||||| || | | | |||| Sbjct 48216 ACATGCTCATGCGTGTCGCTGTTGGCATCCACGGTCAAGACATCGAGAGCGCCATCGAGA 48275 Query 75279 CATACGACAAGATGTCCCAAGGTATG-TTCATTCACGCAACACCAACCCTCTTCAATGCT 75337 | ||| | |||||||| | || || | ||||| | || ||||||||||| ||| Sbjct 48276 CTTACAATCTCATGTCCCA-GAAATACTTTACCCACGCCTCGCCCACCCTCTTCAACGCT 48334 Query 75338 GGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATC 75397 ||||||||| || ||| | || |||||||| || ||| ||||| ||||| ||| Sbjct 48335 GGTACACCACACCCACAGCTCTCGTCGTGCTTCCTGGTCACCATGAAGGACGACTCGATC 48394 Query 75398 AACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATT 75457 |||| ||||| | || || | | |||||| ||||| ||| || || ||||| Sbjct 48395 GACGGCATCTACGACACGCTCAAGACGTGTGCCATGATCTCCAAGACCGCCGGTGGTATC 48454 Query 75458 GGGATGCACATCCA-TG-ATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-ACAAATGG 75513 || | ||||||| || || | | | |||||| ||| || || || || Sbjct 48455 GGTCTCAACATCCACTGCATTCGCGGTACCGG----CTCGTACATCGCCGGCACCAACGG 48510 Query 75514 TCAATCAG--ATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 75571 | |||| | ||||| | || ||||| ||||| |||||| ||| || ||||| || Sbjct 48511 TG--TCAGTAACGGTATCGTACCCATGCTCCGCGTCTTTAACAACACTGCCCGCTACGTC 48568 Query 75572 AATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCAT 75625 | || | || ||||| ||| || | || ||||| | || |||||||| Sbjct 48569 GACCAGGGTGGCAACAAGCGTCC---GGGTGCCTTTGCCATCTACATTGAGCCATGGCAC 48625 Query 75626 GCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGT 75685 | ||| || | |||||||| || | || ||||| || | |||||| || Sbjct 48626 TCGGATGTCTTTGAGTTCCTCGATCTCCGCAAAAACCACGGCAAGGAAGAGATGCGTGCC 48685 Query 75686 AGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGT 75745 | || ||||| | |||| ||| | || || || ||||||||| |||| ||| || Sbjct 48686 CGTGAGCTCTTCTACGCCCTCTGGGTCCCCGATCTCTTCATGAAGAGGGTCGAGCAGAAC 48745 Query 75746 GGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAG 75805 || | ||||| || | || || || || ||||||||| ||||| || || Sbjct 48746 GGCGACTGGTCGCTCATGTGCCCCAACGAGTGCCCAGGTCTCGCCGACTGCTACGGCGAC 48805 Query 75806 GAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGA-CTGTACC 75864 |||||||| ||||||| || || | |||||| | |||| |||| | || | Sbjct 48806 GAGTTTGAGCGCCTCTACGAGCGCTACGAGGCCGAGGGTCGCTCCAA-GCGAACCGT-CA 48863 Query 75865 AGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATA 75923 || ||| || | | ||| | || || ||| | | ||||| ||||| || | || | | Sbjct 48864 AGGCGCAGAAGCTCTGGTACGCCATCCTCGAGTGCCAGACCGAGACCGGCAACCCCTTCA 48923 Query 75924 TGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGA 75983 | || |||||||| ||| ||| ||||| ||||| ||||| | || || |||||| Sbjct 48924 TCCTCTACAAGGACGCTGCCAACCGCAAGAGCAACCAGAAGAACCTCGGCACCATCAAGT 48983 Query 75984 GCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCA 76043 |||| || | ||||| || || | ||||||| | || ||| || || |||| Sbjct 48984 GCTCCAACTTGTGCACCGAGATCATCGAGTACAGCGCCCCCGACGAGGTTGCCGTCTGCA 49043 Query 76044 ATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGC----ACTTTTGAT 76099 | |||| ||||||||||| || | | | || | | |||| || | || Sbjct 49044 ACCTGGCCTCAATCGCCCTGCCCACCTTTATCGACCCTG----TCGCCAAAACGTACGAC 49099 Query 76100 TATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGAC 76159 | | ||||| || | ||| | ||| ||||| ||| |||||||| Sbjct 49100 TTCAAGCGTCTTCACAGCGTCGCCAAGGCCATCTGCAAGAATCTCAACAAGATCATTGAC 49159 Query 76160 AGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGT 76219 | || | ||||| || ||| || || | || || ||||| ||| | || |||||| Sbjct 49160 ATCAACTACTATCCTGTCGAGGAGGCCCGCAGATCCAACATGCGCCACCGCCCCATTGGT 49219 Query 76220 TTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCAGAT 76279 | ||||| ||||||||||| || | || || | ||||||| ||||| || Sbjct 49220 ATCGGTGTCCAAGGTCTCGCCGACGCCTTCATGATCATGGGCTACGCCTTTGAGTCGCCC 49279 Query 76280 GAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCG 76339 || || | || | | |||||||| ||||| || ||||| |||| || || Sbjct 49280 GAGGCTCGTCGCCTCAACGTACAGATCTTTGAGACCATCTACCACGCTGCCCTCGA-ACG 49338 Query 76340 A-GTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTC 76398 | || || ||||| | | || || |||| ||||| | | || || || || || Sbjct 49339 ATCGTGCGAGCTGGCTCAGGAGCACGGCACCTACGAGACCTACGCTGGCTCGCCTGCCTC 49398 Query 76399 CCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACC-AAGCTCAACTACGACTGGG 76457 || || | ||| |||| || ||||||| || | || | | || ||||||| Sbjct 49399 GCAGGGTGAGCTGCAGTACGACATGTGGG-GCGTCACGCCTTCGGACCTCTGGGACTGGG 49457 Query 76458 ATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAA 76517 | ||||||| ||| || | |||||||| ||| || ||| | || || | Sbjct 49458 CAGAGCTCAAGGCTAAGATCGCCAAGCACGGTCTTCGCAACTCGCTCTTGCTCGCTCCTA 49517 Query 76518 TGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACACAA 76577 |||| || ||||| ||| || ||||||||| || || ||||| || || ||||| Sbjct 49518 TGCCTACTGCCTCGACCAGTCAGATCTTGGGTTTCAACGAGTGCTTCGAGCCTTACACCT 49577 Query 76578 CAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTT 76614 | ||||||||| | | | ||||| |||||||| Sbjct 49578 CCAACATCTACTCGCGTCGTGTGCTCGCCGGTGAGTT 49614 >seq62 Length=112892 Score = 114 bits (126), Expect = 2e-20 Identities = 259/386 (67%), Gaps = 10/386 (3%) Strand=Plus/Minus Query 13514 CTCAAGAAGACCGATGGTGCTCGCAAGT---CCAAAATTACCGGTATTCCCAAGTTGGAT 13570 |||||||||||||| || | |||| ||| ||| ||| || |||||| | || Sbjct 20438 CTCAAGAAGACCGACGGC---CACAAGCGAACCAGAATCACCAACATCCCCAAGCTCGAA 20382 Query 13571 GACGCGAACAAGGCGGGTACGGCACAATCTGGAAAG--TGTACTCTCATTGTCACAGAGG 13628 || || ||||| || ||| |||| | || | || || |||||| |||| |||| Sbjct 20381 GATGCCAACAACGCCGGT--GGCAGGAAGGCCAAGGACTGCACACTCATTCTCACCGAGG 20324 Query 13629 GTGATTCGGCTAAAACCCTCGCGGTTGCGGGTCTCTCTGTCGTTGGTCGTGATCACTACG 13688 |||| ||||| ||| | || || ||||| ||| || | || || | || |||||| Sbjct 20323 GTGACTCGGCCAAATCGCTTGCCGTTGCCGGTATCGTCGAGGTCGGAAGGGACAACTACG 20264 Query 13689 GTGTGTTCCCACTTCGCGGTAAATGTAAGAATGTTCGGGACGCTTCGGTGGCACAGCTCA 13748 | || ||||| ||||||||||| | || || || || || ||| | ||| ||| Sbjct 20263 GAGTATTCCCCCTTCGCGGTAAGCTTCTCAACGTCCGCGAGGCATCGCACGACCAGATCA 20204 Query 13749 CATCAAACCAGGAGTTCAACGATCTCAAGAAGATCCTTGGTCTTCAACAAGGAAAAGACT 13808 |||| || |||| | ||||| | ||||| |||||||| || || || | | Sbjct 20203 TGAAAAACGCCGAAATCAAGGCAATCAAGGAAATCCTGGGTCTTCAGCACGGCAAGCAGT 20144 Query 13809 ACCAAGATGTTTCTGAACTTCGCTATGGTCGTCTTATGATTATGACAGATGCCGATAATG 13868 ||| || || || || || || | | ||||| ||||| ||| ||| | | Sbjct 20143 ACCTCGACGTCAACAGCCTGCGTTACGGCAGCATCATGATCATGACCGATCAGGATCACG 20084 Query 13869 ATGGTTCTCACATCAAGGGTCTCATC 13894 | ||||| |||||||||||||||||| Sbjct 20083 ACGGTTCGCACATCAAGGGTCTCATC 20058 >seq21 Length=224232 Score = 100 bits (110), Expect = 3e-16 Identities = 236/344 (69%), Gaps = 18/344 (5%) Strand=Plus/Minus Query 65069 CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCAT 65128 |||| |||||||| || |||| || || || ||||| ||||||||||| || || | Sbjct 32571 CCTTTGCCGAGCGTCTCGTTGCTTTCGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCCT 32512 Query 65129 TCTGCG-CTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 | ||| | || | ||| | |||||||| ||||||||||| || || |||||| || Sbjct 32511 T-TGCATCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTTACCTTCTCCAAC 32453 Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCA-AGAC 65246 || || || ||||| || |||||||| ||| || |||||| |||||||| || Sbjct 32452 GAGCTCATCTCCCGTGACGAGGGTCTTCACACCGACTTTGCCTGCTTGCTCTTCAGCCAC 32393 Query 65247 TTTGCGTAATAGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGAT 65306 | | | ||||| |||| ||| ||| | ||| | | ||||| || || || Sbjct 32392 CTCAAGAAGCGCGCCCAC-CCCGACACTGTCCTCAAGATCATCAGCGAGGCCGTCGAAAT 32334 Query 65307 TGAGAAAGGGTTCATCTTG---GACGCACTCCCATGTA-ATCTCATCGGTATGAACTCTG 65362 || ||||| || ||||| || | || | ||| ||||| || |||||| Sbjct 32333 CGA-AAAGGCTT--TCTTGACAGA-GAGCTTGCCCGTAGCGCTCATTGGCATGAAC---C 32281 Query 65363 AGAAG---ATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTC 65403 ||||| |||| | ||||||||||||| ||| | || |||||| Sbjct 32280 AGAAGGCCATGTGCCAGTACATTGAGTACGTGGCTGACCGTCTC 32237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596525364364160