Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3 113 1e-19 seq21 100 8e-16 >seq3 Length=439134 Score = 113 bits (124), Expect = 1e-19 Identities = 252/376 (67%), Gaps = 2/376 (1%) Strand=Plus/Minus Query 302469 CTGCGACTCAACCTTGATTGGGTCAATTCCGTCATCGCCGTAGGAATACTGAATGATTTT 302528 ||||| |||||||| | ||| || ||||| || || |||| | ||||||| || Sbjct 422717 CTGCGTCTCAACCTGGGCACCGTCGATACCGTCTTCACCATAGGCGAATTGAATGACATT 422658 Query 302529 GTTCTTGTTATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGAT 302588 |||| | ||||| ||||| || || | | ||| | || || | ||||| Sbjct 422657 GTTCGTCGAATTTCGGACGGTGCCGTCGTAGCAGACCATGACATCCTCTAGCGCCTTGAC 422598 Query 302589 TAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAAC 302648 |||||||| || || || || || | || || |||||||| || || ||||| | Sbjct 422597 CAAACGACGTTGGATGTAGCCCGTCTCGGCAGTCTTGACAGCTGTGTCGATCAGACCTTC 422538 Query 302649 ACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGC 302707 |||||| |||| || |||||||| | ||| | || ||| || || | | | ||||| Sbjct 422537 TCGACCAGCCATGGCGTGGAAGAAGAACTCCTG-GGCCGTTAGACCTCGCAGATAGGAGT 422479 Query 302708 TCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCC 302767 | || ||||| ||||||| |||||| | |||| |||||||||||| ||||| | | Sbjct 422478 TTTCGACGAAGCCACGCGACTCGGGGGTGAAGTCGTCCTTGGTAAAGTGCGGCAGACTAC 422419 Query 302768 TGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAA 302827 || | ||| | || ||||| || || || || |||||| || | || | Sbjct 422418 GGTGGCGGAAACCGAAGGGAATACGTTTACCCTCGACAGACTGCTGACCGACACAGGCGG 422359 Query 302828 TCATCTGCGAAATATT 302843 ||||||||| || || Sbjct 422358 ACATCTGCGAGATGTT 422343 >seq21 Length=224232 Score = 100 bits (110), Expect = 8e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133452 AGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTC 133511 |||| | ||||||||| || ||||||| |||| ||| || | ||||| |||| Sbjct 32616 AGAAGGCCGACTGGGCTCTTCGATGGATCAGCGACAGGCGCGCCACCTTTGCCGAGCGTC 32557 Query 133512 TCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGC-TCTATTTTT 133570 |||||||||| || | || |||||||| || ||| || | || ||| || || || Sbjct 32556 TCGTTGCTTTCGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCCTT-TGCATCCATCTTC 32498 Query 133571 TGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGG 133630 ||||| || ||||||||| | | || || || || || ||||| || || || | Sbjct 32497 TGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTTACCTTCTCCAACGAGCTCATCTCCCGT 32438 Query 133631 GACGAGGCACTTCACACCGAATTTGCC 133657 ||||||| ||||||||||| |||||| Sbjct 32437 GACGAGGGTCTTCACACCGACTTTGCC 32411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471705736343084