Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq4 197 2e-44 seq21 145 9e-29 seq31 104 3e-16 seq42 93.3 5e-13 seq3 91.5 2e-12 >seq4 Length=437454 Score = 197 bits (218), Expect = 2e-44 Identities = 202/262 (77%), Gaps = 4/262 (2%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||||||||||||||| || |||| ||||||||||||||||||||| |||| ||||| | Sbjct 48574 CTGGTCGACGTAGCGGGCAGTGTTGTTAAAGACGCGGAGCATGGGTACGATACCGTT--A 48517 Query 1630125 CT--CGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAG 1630182 || | ||||||||||| || | ||| | ||||| |||| | ||| | | Sbjct 48516 CTGACACCGTTGGTGCCGGCGATGTACGAGCCGGTACCGCGAATGCAGTGGATGTTGAGA 48457 Query 1630183 CCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCC 1630242 ||||| || ||||| | ||||||||| | || ||| |||||||||||||||||||| Sbjct 48456 CCGATACCACCGGCGGTCTTGGAGATCATGGCACACGTCTTGAGCGTGTCGTAGATGCCG 48397 Query 1630243 TCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTG 1630302 |||||||||||| |||||||| || || |||||||||||| || ||||| | || Sbjct 48396 TCGATCGAGTCGTCCTTCATGGTGACCAGGAAGCACGACGAGAGCTGTGGGTGTGGTGTA 48337 Query 1630303 CCGGCGTTGAAGAGCGTGGGCG 1630324 || ||||||||||| ||||||| Sbjct 48336 CCAGCGTTGAAGAGGGTGGGCG 48315 Score = 129 bits (142), Expect = 7e-24 Identities = 332/509 (65%), Gaps = 14/509 (3%) Strand=Plus/Minus Query 1628099 CGACAAACTTGGGCAGGGCCACGCTGGAAAGGTTGCAAGTCGCCACTTC--CGTGGGCGA 1628156 ||| ||| |||||||||| | || |||||||| || || || || ||||| Sbjct 49076 CGATAAAGGTGGGCAGGGCGATTGAGGCCAGGTTGCAGACGGCAACCTCGTCGGGGGCGC 49017 Query 1628157 CGAAAACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTG 1628216 | | || || |||||||||||||| ||||| || | | || || ||||||| ||| Sbjct 49016 TGTA--CTCGATGATCTCGGTGCACAAGTTGGAGCACTTGATGGTGCCGAGGTTCTTCTG 48959 Query 1628217 GTTGGTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTG 1628276 |||| | | ||||| | |||||||||| ||| ||| |||| |||||||||| |||| Sbjct 48958 GTTGCTCTTGCGGTTGGCAGCGTCCTTGTAGAGGATGAAGGGGTTGCCGGTCTCGGTCTG 48899 Query 1628277 CGCCGCGACGATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGC---GCGCGGCC 1628333 | ||| |||||| |||||| || |||| | ||| || ||| | ||| || Sbjct 48898 GCACTCGAGGATGGCGTACCAGAGCTTCTGCGC---CTTGACGGTTCGCTTGGAGCGACC 48842 Query 1628334 CTNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCC 1628393 || ||||| | |||||||||| ||| || || Sbjct 48841 CTCGGCCTCGTAGCGCTCGTAGAGGCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGACC 48782 Query 1628394 GGGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCC--ACCGGTCACCGCGCGGCGCATA 1628451 || |||| || || | ||||||||||||||| | | || | | | ||| Sbjct 48781 TGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTCGACCCTC--TTCATG 48724 Query 1628452 AAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCG 1628511 ||||| || ||| || ||||| ||||| || || || || |||| ||||||||| Sbjct 48723 AAGAGATCGGGGACCCAGAGGGCGTAGAAGAGCTCACGGGCACGCATCTCTTCCTTGCCG 48664 Query 1628512 TGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAG 1628571 ||||| || ||| ||||| | || | | || | |||||| ||||| | |||| | Sbjct 48663 TGGTTTTTGCGGAGATCGAGGAACTCAAAGACATCCGAGTGCCATGGCTCAATGTAGATG 48604 Query 1628572 GCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 |||||||| ||| |||||| ||| || Sbjct 48603 GCAAAGGCACCCGGACGCTTGTTGCCACC 48575 Score = 98.7 bits (108), Expect = 1e-14 Identities = 170/245 (69%), Gaps = 13/245 (5%) Strand=Plus/Minus Query 1626987 GACGGTAAACTGGATGGCGTCGGCGGCGGGCCTGGTGCGCAGATAGTACATGCCGGTCTT 1627046 || ||| || |||||||||| || || ||| |||||||||| ||||| | |||||||| Sbjct 49969 GAGGGTGAATTGGATGGCGTTGGAAGCAGGCTTGGTGCGCAGGTAGTAGGTACCGGTCTT 49910 Query 1627047 GAGGCCGCGGCGCCACGCGTAGGCGTGCATCGACGTGATGCGCTCGGGCGTCGCGTCGGC 1627106 ||| || ||| ||||| ||||||||| |||| ||| ||| ||| ||| Sbjct 49909 GAGACCCTTCTTCCAGCCGTAGAAGTGCATCGAGGTGA---GCT--GGCCGAACGTGGGC 49855 Query 1627107 GCAG-----TACAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGATCGGCCGCC 1627161 || | | | |||||||||||| |||| || ||| |||| ||||| ||| Sbjct 49854 GCCGAGAGATGGATGTTGAGCGACTGCGACTGGCAGATGAAGGCACCGCGGTCGGCGGCC 49795 Query 1627162 ATGTCGATGGTGACCCGGTTGGGCACCTCCCACACGGTCTTGAAGATGGCCTTGA---GG 1627218 ||||||||| || || | | | |||||| ||||||||| ||| ||||| || Sbjct 49794 ATGTCGATGATGGCCTTCTGGCTGATCTCCCAGACGGTCTTGTAGAGCTTCTTGATGCGG 49735 Query 1627219 TCGGG 1627223 ||||| Sbjct 49734 TCGGG 49730 >seq21 Length=224232 Score = 145 bits (160), Expect = 9e-29 Identities = 211/288 (73%), Gaps = 9/288 (3%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| || ||| | |||||| |||| || ||||||||||| || ||||| Sbjct 32429 ACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGACCGGGCATGAGACCACGCTT 32488 Query 869239 CTTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 869297 ||||||||| ||||||| ||| || ||||||||| |||||||||||||||||||| | Sbjct 32489 CTTGAGCCAGAAGATGGATGCA-AAGGAGCCCGAGAAGAAGATGCCCTCGACGGCGGCGA 32547 Query 869298 AGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCC 869357 | | | ||| ||||||||||||||| || | ||| | | ||||||| | |||| Sbjct 32548 AAGCAACGAGACGCTCGGCAAAGGTGGCGCG--CCT-GTCGCTGATCCATCGAAGAGCCC 32604 Query 869358 AGTCGGCCTTTTTCCTCACCGAC-GGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTT 869416 |||||||||| | | | | |||| || | || |||| |||| ||||||| || Sbjct 32605 AGTCGGCCTTCTGCTTGA-CGACGGGGATGGTCTCGACGGCGTCAAAGAGGAATTCACGC 32663 Query 869417 TCGGCCGGGTCCTTG-ACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 | | ||||| | | | || | |||||| |||||||| |||||||| Sbjct 32664 T-GCTCGGGTTCGCGAATGTACGAGTCGATGAGGAGCGAGTAGGTCTC 32710 Score = 131 bits (144), Expect = 2e-24 Identities = 180/251 (72%), Gaps = 3/251 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||| || ||||||||| ||||| ||| | |||| || | || Sbjct 32712 GAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAGCGGGCCTCGGCAGCCTGA 32771 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||| || || | ||||||||| ||||| |||||| |||||||| Sbjct 32772 ACTTCGGAGCTGAAACGCTCGACTAGGTTCTCGTTGACGATACCGTCGGAAGCGGCGAAG 32831 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGC---GACACCCAGTGG 869809 ||||| |||||||| ||||||||||||||||| |||| ||||| |||||| | Sbjct 32832 AAAGCAAGGACGTGGGAGATAAAGTGGCGCTCGTTGTCGTTGAGCTTGTTGTCCCAGTCG 32891 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 || | ||||| | |||||| |||||||||| || ||||||||||| ||| Sbjct 32892 TGAAGATCCTTGGAAAGGTCGATCTCCTCTGCGGTCCAGAAGGAAGCCTCGGCCTTCTTG 32951 Query 869870 TACATCTCCCA 869880 ||||| | ||| Sbjct 32952 TACATTTGCCA 32962 Score = 104 bits (114), Expect = 3e-16 Identities = 226/329 (69%), Gaps = 21/329 (6%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 || |||||||| ||| | || | ||| || ||||||||||| || | ||||||||| Sbjct 32115 GCTTTGGCGTATTCGGCGACCTTCTTCTCAAAGAAGTTGGTCTTACCTTGCAGCGAGATC 32174 Query 868751 AACTCCATCCACGGGAACGGGT-TG-GGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACG 868808 || ||| | ||| ||| || |||| | |||||| | |||||| || Sbjct 32175 GACGTCATAAAGTCGAATGGGCATGTGGCGCC--GTAGTGGACCGGGTTTCCGAGGGAAA 32232 Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGC--GTTCATGCC 868866 | | || ||||| || || |||| ||||||||||||||| ||| | ||||||||| Sbjct 32233 CCAAGAGACGGTCAGCCACGTACTCAATGTACTGGCACATG--GCCTTCTGGTTCATGCC 32290 Query 868867 GATGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGAC 868926 |||||||| || |||| ||| ||| || | || ||||| |||||||||||| Sbjct 32291 AATGAGCGCTACGGGCAAGCTCTCTGTCAAGAAAGCCTTTTCGATTTCGACGGCCTCGCT 32350 Query 868927 GATGATCTGCCTGGGCAC---GTCGG---CCGAGGGCTTGTTGACGAGCATCGTGTAGAG 868980 |||||||| || | || ||||| | | |||| |||| | | || |||| Sbjct 32351 GATGATCT---TGAGGACAGTGTCGGGGTGGGCGCGCTTCTTGAGGTG---GCTGAAGAG 32404 Query 868981 CAGGCAGGCAAAGTCGCAGTGCA-ACCCT 869008 || ||||||||||||| ||| | ||||| Sbjct 32405 CAAGCAGGCAAAGTCGGTGTGAAGACCCT 32433 >seq31 Length=170168 Score = 104 bits (114), Expect = 3e-16 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||| || || ||| | | ||| ||||| ||||| ||||||||||| |||| || Sbjct 45872 GCTTGGAAAGCTCACCGGGGAGGATGAGGCGGACGGCAGTCTGGATCTCTCGCGACGAGA 45931 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || |||||| || || || | |||||||||| ||||||| |||| | Sbjct 45932 TGGTCGACTTCTTGTTGTAGGAAGCGAGCTTGGAGGCCTCGGTGGCGATGCGCTCGAAGA 45991 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| | ||||| ||||| | | | ||| | |||||| ||||| || |||||||| Sbjct 45992 TGTCCTGAACAAAGGAGTTGAGAATGGCCATGGCCTTGTTCGAGATACCAGTGTCGGGGT 46051 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 | ||||||||||| || ||| ||| | | |||||| Sbjct 46052 GGACCTGCTTGAGGACACGGTAAATGTAGGTCGAGTA 46088 >seq42 Length=144005 Score = 93.3 bits (102), Expect = 5e-13 Identities = 234/351 (67%), Gaps = 16/351 (5%) Strand=Plus/Minus Query 1573894 CGGGTCCGCCCGGCACGGGCAAGACCAC----GAGCATCGCGTGTCTGGCGCGTGTCCTC 1573949 |||||| ||||| | || |||||||| | || || ||||| || |||| | | Sbjct 62521 CGGGTCTTCCCGGTATCGGAAAGACCACCTCGGTGC-TC---TGTCTCGCCCGTGCCTTA 62466 Query 1573950 TTGGGCGCGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTC 1574009 | |||| || | | || | || || |||||||| || || |||||||| || ||| Sbjct 62465 CTCGGCGATGCTTACAAGGAAGGTGTCCTGGAACTCAATGCCTCCGACGAGCGAGGTGTC 62406 Query 1574010 GACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCA-AGAGGATCGAC---CTGCCGCC 1574065 || || || || || | |||||| ||| | || ||| || | | || ||||| Sbjct 62405 GATGTGGTACGAAACAAGATCAAG----ACGTTTGCACAGAAGAAAGTCTCGCTTCCGCC 62350 Query 1574066 CGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCA 1574125 || | |||||| | |||||| | |||||||||||| || | || |||| || ||||| Sbjct 62349 GGGCAGGCACAAGATCATCATCTTGGACGAGGCCGACAGCATGACACCGGCTGCACAGCA 62290 Query 1574126 GGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAA 1574185 ||| || || |||||||| | | |||| || || | || | | || ||||| Sbjct 62289 GGCACTCAGGAGGACCATGGAGATCTATTCCAATACCACCAGATTCTGCTTTGCTTGCAA 62230 Query 1574186 CACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCG 1574236 | | | | ||||||| || |||| ||||||||||||||||| Sbjct 62229 CCAGAGCAACAAGATCATCGAACCCATCCAGTCGCGCTGCGCCATTCTGCG 62179 >seq3 Length=439134 Score = 91.5 bits (100), Expect = 2e-12 Identities = 145/203 (71%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 507026 GCCACCTACCACAACAACGACATTCGCGGCCAGAAGCAGTCGACCCAG-CGCTCGGGCAA 507084 ||||||| | ||||||||||| ||| ||| ||| | | ||| || ||| || Sbjct 420975 GCCACCTTCATGGACAACGACATTGCCGGTCAGCCTCAGGCTATGCAGTCGAGCGG-CAG 421033 Query 507085 GCCCACCAAGGGCCT-CGTGGAGCGGTTCAAGGGCAAGGAGGGTAGGATCCGCGGCAATT 507143 ||||| ||| | | |||| ||| | |||||||| ||||| || |||| || || | Sbjct 421034 GCCCATCAAATCCATTCGTGC-GCGTCTGAAGGGCAAAGAGGGCCGGCTCCGTGGAAACT 421092 Query 507144 GCATGGGCAAGCGCGTCAACTTTACCGCGCGCGCCGTCATCAGCCCCGACCCCGAGATCG 507203 ||||||||||| ||||||||| | || || ||||||||| | ||||| ||| Sbjct 421093 TGATGGGCAAGCGTGTCAACTTTTCAGCACGTACCGTCATCACCGGTGACCCGCTCCTCG 421152 Query 507204 ACATTGACGAGGTGGGCGTGCCC 507226 | |||||||||| ||||||||| Sbjct 421153 AACTTGACGAGGTCGGCGTGCCC 421175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106652392300444