Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq4 156 4e-33 seq67 125 6e-24 seq10 116 3e-21 >seq4 Length=437454 Score = 156 bits (172), Expect = 4e-33 Identities = 975/1538 (63%), Gaps = 66/1538 (4%) Strand=Plus/Minus Query 138508 ACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAAC 138567 ||||| || |||||||| | || ||||| ||| |||||| |||| ||||||| || Sbjct 49620 ACCTGGAACTCACCGGCGAGCACACGACGCGAGTAGATGTTGGAGGTGTAAGGCTCGAAG 49561 Query 138568 GATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGA 138627 | |||||| |||| |||||| || | || || ||||| || | ||| || Sbjct 49560 CACTCGTTGAAACCCAAGATCTGACTGGTCGAGGCAGTAGGCATAGGAGCGAGCAAGAGC 49501 Query 138628 GAATTCCGTAAACCGTGAAGCTTGAT--TCGTT-CCTTGAGCGACGACCAGTCCCACAAA 138684 || || || | |||||| |||| || | |||||||| | ||||||||| | Sbjct 49500 GAGTTGCGAAGACCGTG---CTTGGCGATCTTAGCCTTGAGCTCTGCCCAGTCCCAGAGG 49444 Query 138685 TCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCT 138744 || ||| | | |||||| |||||||| | | ||| || || ||| Sbjct 49443 TCCGAAGGCGTGACGCCCCACATGTCGTACTGCAGCTCACCCTGCGAGGCAGGCGAGCCA 49384 Query 138745 TCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTT-GCTCGCCTCGAGCGCACC 138803 |||| | ||||| || ||| || |||| |||| | ||| ||||| ||| | Sbjct 49383 GCGTAGGTCTCGTAGGTGCCGTGCTCCTGAGCCAGCTCGCACGATCGT-TCGAGGGCAGC 49325 Query 138804 ATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGG 138863 | ||| || || || ||||| ||||| || ||||||| ||| | || Sbjct 49324 GTGGTAGATGGTCTCAAAGATCTGTACGTTGAGGCGACGAGCCTCGGGCGACTCAAA-GG 49266 Query 138864 CAT-GCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGAT 138922 | | || | ||| |||| |||||||| || ||||| || || | || | ||||| | Sbjct 49265 CGTAGCCCATGATCATGAAGGCGTCGGCGAGACCTTGGACACCGATACCAATGGGGCGGT 49206 Query 138923 GGCGCAGATTTGACGCTTTTGCGG----CTTCGATAGGATAATAGTTTACATCGATGATT 138978 |||||| || || | ||||| | |||| |||||| ||||| | || ||||| Sbjct 49205 GGCGCATGTTGGA----TCTGCGGGCCTCCTCGACAGGATAGTAGTTGATGTCAATGATC 49150 Query 138979 TTGTTTAAATT-TCGCACGACCACCTTAGTCGTATGCTTTAAT--CGTTCAAAATCGTAT 139035 ||||| | ||| | ||| || |||| | || | ||| | | || | || ||||| Sbjct 49149 TTGTTGAGATTCTTGCA-GATGGCCTTGG-CG-ACGCTGTGAAGACGCTTGAAGTCGTA- 49094 Query 139036 GTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTG 139095 |||| | | |||| ||||| ||| || | || ||||| | |||| Sbjct 49093 -------CGTTTTGG-CGACAGGGTCGATAAAGGTGGGCAGGGCGATTGAGGCCAGGTTG 49042 Query 139096 CACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACAC 139155 || || || || ||||||||| ||||||| |||| || |||| ||||| || ||| Sbjct 49041 CAGACGGCAACCTCGTCGGGGGCGCTGTACTCGATGATCTCGGTGCACAAGTTGGAGCAC 48982 Query 139156 TTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATA 139215 ||||| || || | || | || ||||| || ||||| ||| || ||||| || || Sbjct 48981 TTGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCGTCCTTGTAGAGGATG 48922 Query 139216 TACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTAGCTTGT 139275 | || |||| || || || ||| | ||| | || || ||||| | Sbjct 48921 AAGGGGTTGCCGGTCTCGGTCTGGCACTCGAGGATGGCGT---ACCAG-----AGCTTCT 48870 Query 139276 AT---TTGACG-----CACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGA 139327 |||||| | | | | | ||| |||||| |||||||| || | Sbjct 48869 GCGCCTTGACGGTTCGCTTGGAGCGACCCTCGGCCTCGTAGCGCTCGTAGAGGCGCTCAA 48810 Query 139328 A-TCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCAT 139386 | |||| | |||||| ||| | ||| | | |||| || || |||||||||||||| Sbjct 48809 ACTCGT-CGCCGTAGCAGTCGGCGAGACCTGGGCACTCGTTGGGGCACATGAGCGACCAG 48751 Query 139387 ACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAA 139446 |||||||| || ||| | | ||||||| ||||| || | ||| | ||| | | | Sbjct 48750 TCGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCGGGGACCCAGAGGGCGTAGAAGAGC 48691 Query 139447 TCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTC--ATGTTAAGGAAATCAAAAA 139504 || || || | | |||||| || ||| || | | | ||||| ||||| | Sbjct 48690 TCACGGGCACGCATCTCTTCCTTGCCGTGGTTT--TTGCGGAGATCGAGGAACTCAAAGA 48633 Query 139505 CGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTG---CCACCTT 139561 | || | ||||||||| || | |||||||| | || || || ||| ||||| | Sbjct 48632 CATCCGAGTGCCATGGCTCAATGTAGATGGCAAAGGCACCCGGACGCTTGTTGCCACCCT 48573 Query 139562 GATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTG 139621 | ||||||| || ||| || || || ||||| | ||| || | | |||| | ||| Sbjct 48572 GGTCGACGTAGCGGGCAGTGTTGTTAAAGACGCGGAGCATGGGTACGATACCGTTA-CTG 48514 Query 139622 TT-CCGTTGGTGCTACGGATGGGACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCG 139680 |||||||||| |||| | | | | || | | || | |||| ||| Sbjct 48513 ACACCGTTGGTGCCGGCGATGTACGAGCCGGTACCGCGAATGCAGTGGATGTTGAGACCG 48454 Query 139681 ATTCCGCCGCCAAATTTGGATATTAAAACGCAA-TCGCGTAATGTCTCGTATATACCTCT 139739 || || ||| | ||||| || | | || || | | || ||||| || || Sbjct 48453 ATACCACCGGCGGTCTTGGAGATCATGGCACACGTCTTG-AGCGTGTCGTAGATGCCGTC 48395 Query 139740 TATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCC 139799 || |||||||| ||| |||||||| ||||| ||||| || || || || || || Sbjct 48394 GATCGAGTCGTCCTTCATGGTGACCAGGAAGCACGACGAGAGCTGTGGGTGTGGTGTACC 48335 Query 139800 GGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGT 139859 || || || || || ||||| || || || | ||||| | | ||| || Sbjct 48334 AGCGTTGAAGAGGGTGGGCGAGGCGTGGGTAAAGTATTTCTGGGACATGAGATTGTAAGT 48275 Query 139860 TTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATG 139919 |||||||||||| | || || |||||||| || |||| ||| ||||| ||||| || Sbjct 48274 CTCGATGGCGCTCTCGATGTCTTGACCGTGGATGCCAACAGCGACACGCATGAGCATGTG 48215 Query 139920 TTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATA--ACCGTTCTCTAGGGTC 139977 ||| || || || ||| || | ||| ||| || | || ||| || ||| Sbjct 48214 TTGAGGACGCTCAGCGACCTTTCCGTTGATGCGGAGCAGGTAGGAACG--CTCGAGCGTC 48157 Query 139978 TTGTAGCCAAAGTACCTATAGTTGAAATCGAGCGCATA 140015 ||| | || ||| | | |||| ||||||| || |||| Sbjct 48156 TTGAATCCGAAGAAGTTGTAGTGGAAATCGCGCTCATA 48119 >seq67 Length=99859 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || || || ||||| ||||| || ||| | | Sbjct 38318 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAGACCATTACCCTCGAGGTCGAATCTTCG 38259 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || ||||| ||||| Sbjct 38258 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGATCAG 38199 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | |||||||| || || ||||| ||||| | | | | || || || ||| Sbjct 38198 CAGCGTCTCATCTTTGCAGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAAC 38139 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||||||||| || ||| | || |||||| | ||||| || Sbjct 38138 ATTCAGAAGGAATCGACCCTTCACCTTGTCTTGCGACTCCGCGGTGG 38092 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || ||||| || || || ||||| ||||| | || Sbjct 38546 ATGCAGATCTTTGTCAAGACTCTGACTGGTAAGACCATCACCCTCGAGGTAGAGTCTTCC 38487 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || ||||||||||| Sbjct 38486 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGATCAG 38427 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| | ||||| || || || ||||| ||||| | | | | || || || ||| Sbjct 38426 CAACGCCTCATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGTACCCTCTCGGACTACAAC 38367 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || ||||||||||| || || ||||| Sbjct 38366 ATCCAGAAGGAATCGACCCTCCATTTGGT 38338 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || |||||| | ||||| || | | Sbjct 38090 ATGCAGATCTTTGTAAAGACACTCACGGGAAAGACGATTACGTTGGAAGTCGAGTCTTCG 38031 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| ||||| || || || || || Sbjct 38030 GACACGATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATCCCACCTGACCAG 37971 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||||||||| || |||||||| || | | | || || || ||| Sbjct 37970 CAGCGCTTGATCTTTGCCGGTAAGCAGCTGGAAGACGGTCGCACGCTCTCGGACTACAAC 37911 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| || | ||| | || | |||||||||||||| Sbjct 37910 ATTCAGAAGGAGAGCACTTTGCACCTCGTACTTCGATTGCGCGGAGG 37864 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||||| || || ||||| || || | ||||| || | | Sbjct 37862 ATGCAGATCTTTGTCAAGACGCTCACTGGCAAAACCATCACATTGGAAGTCGAGTCTTCG 37803 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 37802 GACACGATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCACCTGACCAG 37743 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| |||||||||| || || ||| |||| ||| | | | || ||||| ||| Sbjct 37742 CAGCGTCTGATCTTTGCTGGTAAGCAGTTGGAAGATGGTCGCACTCTTTCCGATTACAAC 37683 Query 24884 ATTCAAAAGGA 24894 ||||| ||||| Sbjct 37682 ATTCAGAAGGA 37672 >seq10 Length=322828 Score = 116 bits (128), Expect = 3e-21 Identities = 168/236 (71%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 24697 TGATAC--GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTA 24754 |||||| ||||||||||||| | || || || || ||||| || || || ||||| || Sbjct 83502 TGATACAAGATGCAGATCTTTGTCAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTT 83561 Query 24755 GAAGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCT 24814 || | | ||||| | || | || || |||||||| ||||| || || || || Sbjct 83562 GAGTCTTCGGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCC 83621 Query 24815 CCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCA 24874 ||||| || || || ||||||||||||| || ||||| ||||| | | | | || Sbjct 83622 CCCGACCAGCAGCGCCTGATCTTTGCCGGTAAGCAGCTCGAGGACGGCCGTACCCTTTCG 83681 Query 24875 GATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || |||||||| ||||| ||||| || ||| | ||| | || |||| || || Sbjct 83682 GACTACAACATTCAGAAGGAGTCGACCCTCCACCTCGTGCTTCGCCTGCGTGGTGG 83737 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | ||||| || || || || ||||| || ||| | | Sbjct 156566 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACGATCACTCTCGAGGTCGAATCGTCG 156507 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| ||||| || || || || || Sbjct 156506 GACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAAGGCATTCCACCTGACCAG 156447 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | |||||||| || || ||||| |||||| | | |||| || || ||| Sbjct 156446 CAGCGACTCATCTTTGCTGGAAAGCAGCTCGAGGATGGCCGCACTTTGTCCGACTACAAC 156387 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| || || || ||| |||| |||| | || ||||| Sbjct 156386 ATTCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGTCTCCGTGGAGG 156340 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || || || || || || ||||| || || || | Sbjct 156795 GATGCAGATCTTTGTCAAGACTCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTC 156736 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||| || || || || || || || ||||| Sbjct 156735 CGACACCATTGACAACGTCAAGGCCAAGATCCAGGATAAGGAGGGTATTCCACCTGATCA 156676 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || | ||||||||||| || ||||| || || | | | || ||||| || Sbjct 156675 GCAGCGACTCATCTTTGCCGGCAAGCAGCTCGAAGACGGCCGCACGCTCTCTGATTACAA 156616 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| ||||| || ||| | || | || |||| || || Sbjct 156615 CATCCAGAAGGAGTCGACGCTCCACCTCGTCCTCCGTCTGCGTGGTGG 156568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449864240092960