Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq21 181 2e-39 seq4 170 3e-36 seq31 136 6e-26 seq42 91.5 2e-12 seq3 89.7 8e-12 >seq21 Length=224232 Score = 181 bits (200), Expect = 2e-39 Identities = 242/332 (73%), Gaps = 11/332 (3%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| || ||| | |||||| ||| || ||||||||||| || ||||| Sbjct 32429 ACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGACCGGGCATGAGACCACGCTT 32488 Query 794400 CTTGAGCCAAAAGATG---GCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC 794456 ||||||||| |||||| ||| || | ||||||||| |||||||||||||||||||| Sbjct 32489 CTTGAGCCAGAAGATGGATGCAAAGGA---GCCCGAGAAGAAGATGCCCTCGACGGCGGC 32545 Query 794457 AAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGC 794516 || | ||||| ||||||||||| ||| | || | | | ||||||| | || Sbjct 32546 GAAAGCAACGAGACGCTCGGCAAAGGTGGC---GCGCCTGTCGCTGATCCATCGAAGAGC 32602 Query 794517 CCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTT 794576 ||| || ||||| | | | || ||| | || |||| |||| ||||||| || Sbjct 32603 CCAGTCGGCCTTCTGCTTGACGACGGGGATGGTCTCGACGGCGTCAAAGAGGAATTCACG 32662 Query 794577 CTCGACCGGGTCCTTG-ACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGT 794635 || | ||||| | | | ||| | |||||||||||||||||||||||| |||||||||| Sbjct 32663 CT-GCTCGGGTTCGCGAATGTACGAGTCGATGAGGAGCGAGTAGGTCTCGGAGTGGATGT 32721 Query 794636 TTTCGATGGCGATCTGGAAGCCATAAAAGCAG 794667 | || || ||||||||| || || |||||| Sbjct 32722 TCTCCATCATGATCTGGAAACCGTAGAAGCAG 32753 Score = 104 bits (114), Expect = 4e-16 Identities = 181/256 (71%), Gaps = 12/256 (5%) Strand=Plus/Plus Query 793893 ACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 793952 ||||| || ||||| || ||| | || | ||| || ||||||||||| || | ||| Sbjct 32109 ACGCCGGCTTTGGCGTATTCGGCGACCTTCTTCTCAAAGAAGTTGGTCTTACCTTGCAGC 32168 Query 793953 GAGATCAACTCCATCCACGGGAACGGGT-TG-GCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 |||||| || ||| | ||| ||| || | || | |||||| | | |||| Sbjct 32169 GAGATCGACGTCATAAAGTCGAATGGGCATGTGGCGCC--GTAGTGGACCGGGTTTCCGA 32226 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGC--GTT 794068 | || | | || ||||| || ||| | |||||||||||||||||| | | | ||| Sbjct 32227 GGGAAACCAAGAGACGGTCAGCCACGTACTCAATGTACTGGCACATG--GCCTTCTGGTT 32284 Query 794069 CATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAA--ACTCTTTCTCGATCTCGACG 794126 |||||| |||||||| ||||||| ||| ||| ||| | | || ||||| |||||| Sbjct 32285 CATGCCAATGAGCGCTACGGGCAAG--CTCTCTGTCAAGAAAGCCTTTTCGATTTCGACG 32342 Query 794127 GCCTCGATGATGATCT 794142 |||||| ||||||||| Sbjct 32343 GCCTCGCTGATGATCT 32358 >seq4 Length=437454 Score = 170 bits (188), Expect = 3e-36 Identities = 196/262 (75%), Gaps = 4/262 (2%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||||||||| ||||| || |||| ||||||||||||||||||||| || | ||||| | Sbjct 48574 CTGGTCGACGTAGCGGGCAGTGTTGTTAAAGACGCGGAGCATGGGTACGATACCGTT--A 48517 Query 2073600 CT--CGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAG 2073657 || | ||||||||||| || | ||| | ||| | |||| | ||| | | Sbjct 48516 CTGACACCGTTGGTGCCGGCGATGTACGAGCCGGTACCGCGAATGCAGTGGATGTTGAGA 48457 Query 2073658 CCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCC 2073717 ||||| || ||||| | ||||||||| | || ||| | || ||||| ||||||||||| Sbjct 48456 CCGATACCACCGGCGGTCTTGGAGATCATGGCACACGTCTTGAGCGTGTCGTAGATGCCG 48397 Query 2073718 TCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTG 2073777 |||||||||||| |||||||| | ||| |||||||||||| || ||| | | || Sbjct 48396 TCGATCGAGTCGTCCTTCATGGTGACCAGGAAGCACGACGAGAGCTGTGGGTGTGGTGTA 48337 Query 2073778 CCGGCATTGAAGAGCGTGGGCG 2073799 || || |||||||| ||||||| Sbjct 48336 CCAGCGTTGAAGAGGGTGGGCG 48315 Score = 127 bits (140), Expect = 3e-23 Identities = 288/439 (66%), Gaps = 0/439 (0%) Strand=Plus/Minus Query 2071574 ACTGGACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGC 2071633 ||| || || ||||||||||| ||||| || | ||||||| ||||||| |||||||| Sbjct 49013 ACTCGATGATCTCGGTGCACAAGTTGGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTGC 48954 Query 2071634 TGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCG 2071693 | | ||||| | |||||||||| || ||| |||| || |||||| |||| | Sbjct 48953 TCTTGCGGTTGGCAGCGTCCTTGTAGAGGATGAAGGGGTTGCCGGTCTCGGTCTGGCACT 48894 Query 2071694 TGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCGCGGCCCTNNNNNN 2071753 || |||||| |||| | | |||| || | | | | ||| |||| Sbjct 48893 CGAGGATGGCGTACCAGAGCTTCTGCGCCTTGACGGTTCGCTTGGAGCGACCCTCGGCCT 48834 Query 2071754 NNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCT 2071813 ||||| ||||| || |||||| ||| ||| || || || || Sbjct 48833 CGTAGCGCTCGTAGAGGCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGACCTGGGCACT 48774 Query 2071814 CGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTCGC 2071873 || ||||| | |||||||||||||||| | | || | ||| || || ||| Sbjct 48773 CGTTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCGG 48714 Query 2071874 ACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTT 2071933 ||| ||| |||| ||||| || || || || |||| |||||||||||||| || Sbjct 48713 GGACCCAGAGGGCGTAGAAGAGCTCACGGGCACGCATCTCTTCCTTGCCGTGGTTTTTGC 48654 Query 2071934 TCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGC 2071993 || ||||| | || | || || | |||||| ||||| | |||| ||||||||| | Sbjct 48653 GGAGATCGAGGAACTCAAAGACATCCGAGTGCCATGGCTCAATGTAGATGGCAAAGGCAC 48594 Query 2071994 CCTTGCGCTTGCCGCCGCC 2072012 || |||||| ||| || Sbjct 48593 CCGGACGCTTGTTGCCACC 48575 Score = 93.3 bits (102), Expect = 7e-13 Identities = 168/240 (70%), Gaps = 8/240 (3%) Strand=Plus/Minus Query 2069256 GACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCGGTCTT 2069315 || ||| || ||||||||||||| |||||| ||||||||| ||||| | |||||||| Sbjct 49969 GAGGGTGAATTGGATGGCGTTGGAAGCAGGCTTGGTGCGCAGGTAGTAGGTACCGGTCTT 49910 Query 2069316 GAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGATGGACTCGGCATTCG-GGACGG 2069374 ||| || ||| ||||| ||||||||| |||| || | | || || || Sbjct 49909 GAGACCCTTCTTCCAGCCGTAGAAGTGCATCGAGGTGA---GCTGGCCGAACGTGGGCGC 49853 Query 2069375 C-ACAG-TAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCCGCCAT 2069432 | | || | || |||||||||||| |||| || ||| |||||||||| ||||| Sbjct 49852 CGAGAGATGGATGTTGAGCGACTGCGACTGGCAGATGAAGGCACCGCGGTCGGCGGCCAT 49793 Query 2069433 GTCGATGGTCACGCGGTTGGACACCTCCCACACGGTCTTGAACAGGGCCTTGAGATGCGG 2069492 ||||||| | | | | | |||||| ||||||||| | || ||| ||||||| Sbjct 49792 GTCGATGATGGCCTTCTGGCTGATCTCCCAGACGGTCTTGTAGAGCTTCTT--GATGCGG 49735 >seq31 Length=170168 Score = 136 bits (150), Expect = 6e-26 Identities = 182/253 (72%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 |||||||||| | ||||||||| || |||| ||||||| ||| || || ||| | | || Sbjct 45836 ACTTGGTGACCGACTTGGTACCTTCCGAGATGGCGTGCTTGGAAAGCTCACCGGGGAGGA 45895 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCG 1485592 | ||||| ||||| ||||||||||| || | ||| || |||||| | | Sbjct 45896 TGAGGCGGACGGCAGTCTGGATCTCTCGCGACGAGATGGTCGACTTCTTGTTGTAGGAAG 45955 Query 1485593 CCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGA 1485652 | || | |||||||||| ||||||| |||| ||||| | ||||| ||||| | | Sbjct 45956 CGAGCTTGGAGGCCTCGGTGGCGATGCGCTCGAAGATGTCCTGAACAAAGGAGTTGAGAA 46015 Query 1485653 TCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAAA 1485712 | | ||| | ||||| ||||| || ||||||||| ||||||||||| || ||||| Sbjct 46016 TGGCCATGGCCTTGTTCGAGATACCAGTGTCGGGGTGGACCTGCTTGAGGACACGGTAAA 46075 Query 1485713 CAAAGGACGAGTA 1485725 ||| |||||| Sbjct 46076 TGTAGGTCGAGTA 46088 >seq42 Length=144005 Score = 91.5 bits (100), Expect = 2e-12 Identities = 183/268 (68%), Gaps = 10/268 (4%) Strand=Plus/Minus Query 2019111 GTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGACGTCGTGCGTAGAATCATCAAG 2019170 || || ||||||||||| || |||||||| || || || || || || | | |||||| Sbjct 62441 GTCCTGGAACTCAATGCCTCCGACGAGCGAGGTGTCGATGTGGTACGAAACAAGATCAAG 62382 Query 2019171 CATCACGCTT----CGAAAAGAATCGACCTGCCGCCCGGCCGCCACAAGGTGATCATCCT 2019226 ||| || ||| | | || || ||||| ||| | |||||| | |||||| | Sbjct 62381 ----ACGTTTGCACAGAAGAAAGTCTCGCTTCCGCCGGGCAGGCACAAGATCATCATCTT 62326 Query 2019227 CGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCCCTCCGATCGACCATGGAAAA 2019286 || ||||||||| || | || |||| || |||||||| ||| | ||||||||| | Sbjct 62325 GGACGAGGCCGACAGCATGACACCGGCTGCACAGCAGGCACTCAGGAGGACCATGGAGAT 62266 Query 2019287 GTACACCAACACGACGCGGTT-TGCGCTGGCCTGCAACACGTCGTCGATGGTCATCGAAG 2019345 || |||| || || | || ||| | || |||||| | | | |||||||| Sbjct 62265 CTATTCCAATACCACCAGATTCTGC-TTTGCTTGCAACCAGAGCAACAAGATCATCGAAC 62207 Query 2019346 CCCTCCAGAGCCGTTGCGCCATCTTGCG 2019373 || ||||| || |||||||| |||| Sbjct 62206 CCATCCAGTCGCGCTGCGCCATTCTGCG 62179 >seq3 Length=439134 Score = 89.7 bits (98), Expect = 8e-12 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 429069 AAGGGCAAGGAGGGCCGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAACTTTACGGCG 429128 |||||||| ||||||||| |||| || || | ||||||||||| ||||||||| | || Sbjct 421062 AAGGGCAAAGAGGGCCGGCTCCGTGGAAACTTGATGGGCAAGCGTGTCAACTTTTCAGCA 421121 Query 429129 CGCGCCGTCATCAGTCCCGACCCCGAAATCGACATTGACGAGGTGGGCGTGCCC 429182 || ||||||||| ||||| |||| |||||||||| ||||||||| Sbjct 421122 CGTACCGTCATCACCGGTGACCCGCTCCTCGAACTTGACGAGGTCGGCGTGCCC 421175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915615386104148