Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq67 149 4e-31 seq10 131 1e-25 seq18 102 5e-17 >seq67 Length=99859 Score = 149 bits (164), Expect = 4e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| | ||| | || || ||||| | |||||||||||||||||||| |||||||| Sbjct 37864 CCTCCGCGCAATCGAAGTACGAGGTGCAAAGTGCTCTCCTTCTGAATGTTGTAGTCCGAG 37923 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| | || ||||| ||||| ||||| ||||||| || |||||||| | || Sbjct 37924 AGCGTGCGACCGTCTTCCAGCTGCTTACCGGCAAAGATCAAGCGCTGCTGGTCAGGTGGG 37983 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || |||||||| | || || |||||| | |||| || | |||||| Sbjct 37984 ATACCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATCGTGTCCGAAGACTCGACT 38043 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | || || |||||||||||||| |||||||||||||||||||| Sbjct 38044 TCCAACGTAATCGTCTTTCCCGTGAGTGTCTTTACAAAGATCTGCAT 38090 Score = 134 bits (148), Expect = 9e-27 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | ||||||||||||||||||||| || || || || |||| |||| Sbjct 37651 AGGACGAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGACCATCT 37710 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||| || || |||||||| || |||||||| | || | ||||||||||| Sbjct 37711 TCCAACTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCC 37770 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | |||| || | |||||| || | || ||||| Sbjct 37771 TGGATCTTGGCCTTGACGTTGTCAATCGTGTCCGAAGACTCGACTTCCAATGTGATGGTT 37830 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || ||||| ||||| |||||||||||||| Sbjct 37831 TTGCCAGTGAGCGTCTTGACAAAGATCTGCAT 37862 Score = 122 bits (134), Expect = 6e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| || | ||| |||||||| ||||| |||||||| ||| | || | || Sbjct 38335 AGGACCAAATGGAGGGTCGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCGTCC 38394 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || |||||||| |||||||| || |||||||| || | || | ||||||||||| Sbjct 38395 TCGAGCTGCTTTCCAGCGAAGATGAGGCGTTGCTGATCGGGAGGAATGCCCTCCTTGTCC 38454 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | |||| || | ||| || || | ||| |||||| Sbjct 38455 TGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGAAGACTCTACCTCGAGGGTGATGGTC 38514 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 || || || || ||||| ||||||||||||||||| Sbjct 38515 TTACCAGTCAGAGTCTTGACAAAGATCTGCATGAT 38549 Score = 118 bits (130), Expect = 7e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || ||| ||||||| ||| |||||||||||||| |||||||| ||| |||| | || Sbjct 38106 CAAGACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCCGAGAGGGTGCGGCCGTC 38165 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || || ||||| || || ||||| || | || | ||||||||||| Sbjct 38166 CTCGAGCTGCTTGCCTGCAAAGATGAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTC 38225 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || |||||| | |||| || | ||||| || | ||| ||||| Sbjct 38226 CTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAAGATTCGACCTCGAGGGTAATGGT 38285 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || || | |||||| |||||||||||||| Sbjct 38286 CTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 38318 >seq10 Length=322828 Score = 131 bits (144), Expect = 1e-25 Identities = 160/216 (74%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||| | ||| ||||||||||||||| |||||||| ||| | || | || Sbjct 83722 AGCACGAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAAAGGGTACGGCCGTCC 83663 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||| |||||||| || |||||||| | || | ||||||||||| Sbjct 83662 TCGAGCTGCTTACCGGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCC 83603 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| || | ||||| || | ||| || || | ||| || Sbjct 83602 TGGATCTTGGCCTTGAC--AT--TGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGAT 83547 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| |||||||||||||| |||||||||||||| Sbjct 83546 GGTCTTACCCGTGAGGGTCTTGACAAAGATCTGCAT 83511 Score = 118 bits (130), Expect = 7e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||||||||| | |||| ||||||||||||||| ||||| || | |||| |||| Sbjct 156354 CAGGACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAAAGTGCGGCCATC 156413 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || |||||||| || ||||| ||||| |||||||| | || | || |||||||| Sbjct 156414 CTCGAGCTGCTTTCCAGCAAAGATGAGTCGCTGCTGGTCAGGTGGAATGCCTTCCTTGTC 156473 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || |||||| | || | || | ||||| || | || || || Sbjct 156474 CTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGACGATTCGACCTCGAGAGTGATCGT 156533 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || || | |||||| |||||||||||||| Sbjct 156534 CTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 156566 Score = 116 bits (128), Expect = 2e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | || ||||||||| ||||| || || || || |||| | || Sbjct 156583 AGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCAGAGAGCGTGCGGCCGTCT 156642 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||| ||||| ||||| ||||| || | || | |||||||| || Sbjct 156643 TCGAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGATCAGGTGGAATACCCTCCTTATCC 156702 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || || |||||| || | ||| |||||| Sbjct 156703 TGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTC 156762 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || |||||||| ||||| |||||||||||||| Sbjct 156763 TTGCCCGTGAGAGTCTTGACAAAGATCTGCAT 156794 >seq18 Length=237310 Score = 102 bits (112), Expect = 5e-17 Identities = 139/192 (72%), Gaps = 8/192 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | ||| ||||||||| ||||| |||||||| || |||| | || Sbjct 132605 AGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCC 132546 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||||||||| |||||||| || |||||||| | || | ||||||||||| Sbjct 132545 TCGAGCTGCTTTCCGGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCC 132486 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| || | ||||| || || ||| || |||| ||| || Sbjct 132485 TGAATCTTGGCCTTGAC--AT--TGTCGATGGTGTCCGAGGACTCCACCTCAAGGGTAAT 132430 Query 34942 GGTCTTTCCCGT 34953 |||||| || || Sbjct 132429 GGTCTTACCTGT 132418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325669253631908