Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq67 93.3 3e-14 seq10 86.0 5e-12 >seq67 Length=99859 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 29596 TCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATAT 29655 || || |||||||| ||||| | || |||||| ||| || | || || |||||| | Sbjct 37672 TCCTTCTGAATGTTGTAATCGGAAAGAGTGCGACCATCTTCCAACTGCTTACCAGCAAAG 37731 Query 29656 ATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTT 29715 |||| | ||||| || || || |||||||| ||||| || | || ||||| | Sbjct 37732 ATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 37791 Query 29716 TCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACA 29775 || | ||||| ||| || ||||| | || || ||||||||||| | || || ||| Sbjct 37792 TCAATCGTGTCCGAAGACTCGACTTCCAATGTGATGGTTTTGCCAGTGAGCGTCTTGACA 37851 Query 29776 AATATCTGCAT 29786 || |||||||| Sbjct 37852 AAGATCTGCAT 37862 >seq10 Length=322828 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| || || | || ||||| || || || || ||||| ||||| | Sbjct 156568 CCACCACGCAGACGGAGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCAGAG 156627 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| || ||||| || ||||| ||| | || | || |||||||| || ||| Sbjct 156628 AGCGTGCGGCCGTCTTCGAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGATCAGGTGGA 156687 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||||||| || || || | || ||||| | || | ||||| || || || Sbjct 156688 ATACCCTCCTTATCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGGACTCGACC 156747 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || ||||| || | || || ||||| |||||||| Sbjct 156748 TCGAGGGTGATGGTCTTGCCCGTGAGAGTCTTGACAAAGATCTGCAT 156794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385191350096412