Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq67 105 4e-18 seq18 86.0 4e-12 seq10 86.0 4e-12 >seq67 Length=99859 Score = 105 bits (116), Expect = 4e-18 Identities = 145/200 (73%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 33552 AGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCC 33611 ||||||||| || || |||||||| || ||||| ||||| |||| |||| || || || Sbjct 37893 AGTGCTCTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGACCGTCTTCCAGCTGCTTACC 37952 Query 33612 GGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTT 33671 |||||| ||||| |||||||| || | || | |||||| ||||| || || || Sbjct 37953 GGCAAAGATCAAGCGCTGCTGGTCAGGTGGGATACCTTCCTTGTCCTGGATCTTGGCCTT 38012 Query 33672 CAACATAGTCACG-GTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACG 33730 | | | |||| ||||| || || || || | ||| ||||| || || || | | Sbjct 38013 GA-CGTTGTCAATCGTGTCCGAAGACTCGACTTCCAACGTAATCGTCTTTCCCGTGAGTG 38071 Query 33731 TTTTTACAAAGATCTGCATA 33750 | |||||||||||||||||| Sbjct 38072 TCTTTACAAAGATCTGCATA 38091 Score = 100 bits (110), Expect = 2e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 33553 GTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCG 33612 |||||||| || || |||||||||||||| || ||||| | || ||||| || || || Sbjct 37666 GTGCTCTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGACCATCTTCCAACTGCTTACCA 37725 Query 33613 GCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTC 33672 ||||| |||| ||||||||| || | || | ||| || ||||| || || | | Sbjct 37726 GCAAAGATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCCTGGATCTT-GGCCTT 37784 Query 33673 AACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGT 33731 || | ||| | ||||| || || || || | ||||| ||||| || || | ||| Sbjct 37785 GACGTTGTCAATCGTGTCCGAAGACTCGACTTCCAATGTGATGGTTTTGCCAGTGAGCGT 37844 Query 33732 TTTTACAAAGATCTGCATA 33750 || ||||||||||||||| Sbjct 37845 CTTGACAAAGATCTGCATA 37863 >seq18 Length=237310 Score = 86.0 bits (94), Expect = 4e-12 Identities = 144/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | || | || || || ||| || || |||||||| || || Sbjct 132621 ACCACCACGCAGACGGAGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 132562 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| ||||| |||| || | || ||||||||||| |||| |||||||| || | || Sbjct 132561 GAGCGTGCGGCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAGGCGCTGCTGGTCGGGGGG 132502 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||| || ||||| ||| || | | |||| ||| | |||||| || |||| Sbjct 132501 GATACCCTCCTTGTCCTGAATCTT-GGCCTTGACATTGTCGATGGTGTCCGAGGACTCCA 132443 Query 33701 CGTCAACCGTGATCGTTTTACCTGTT 33726 | |||| || || || ||||||||| Sbjct 132442 CCTCAAGGGTAATGGTCTTACCTGTT 132417 >seq10 Length=322828 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||| || || ||| ||| || || |||||||| ||||| | ||||| | || || Sbjct 156358 ACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAAAGTGCGGCCATCCTCG 156417 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | || ||||| ||||| || | |||||||| || | || | ||||| ||||| | Sbjct 156418 AGCTGCTTTCCAGCAAAGATGAGTCGCTGCTGGTCAGGTGGAATGCCTTCCTTGTCCTGA 156477 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || || | | | ||| | |||||| ||||| || || | |||||||| || Sbjct 156478 ATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGACGATTCGACCTCGAGAGTGATCGTCTT 156536 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || || || || ||||||||||||||| Sbjct 156537 GCCGGTCAAGGTCTTGACAAAGATCTGCATA 156567 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | || | || || || ||| || || ||||||||||| || Sbjct 156567 ACCACCACGCAGACGGAGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCAGA 156626 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| ||||| |||| || | || || |||||||| || | ||||||||||| | || Sbjct 156627 GAGCGTGCGGCCGTCTTCGAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGATCAGGTGG 156686 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||| || || || || || | | || | ||| | ||||||| || || | Sbjct 156687 AATACCCTCCTTATCCTGGATCTT-GGCCTTGACGTTGTCAATGGTGTCGGAGGACTCGA 156745 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || || || | || || |||||||||||||| Sbjct 156746 CCTCGAGGGTGATGGTCTTGCCCGTGAGAGTCTTGACAAAGATCTGCAT 156794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328680235933440