Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq4 210 2e-49 >seq4 Length=437454 Score = 210 bits (232), Expect = 2e-49 Identities = 988/1542 (64%), Gaps = 49/1542 (3%) Strand=Plus/Minus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCT-GAGATACACATTGCTAGTGAAAGG 146951 |||||||| || ||||| || || |||||||| | ||| || | ||| ||| |||| Sbjct 49626 TTGACCACCTGGAACTCACCGGCGAGCACACGACGCGAG-TAGATGTTGGAGGTGTAAGG 49568 Query 146952 CTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCAC 147011 ||| || |||| || || || || || || | || |||||||| || | Sbjct 49567 CTCGAAGCACTCGTTGAAACCCAAGATCTGACTGGTCGAGGCAGTAGGCATAGGAGCGAG 49508 Query 147012 CAACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCA 147071 ||| | || || || ||||||| | ||| || |||| | | ||||||||| Sbjct 49507 CAAGAGCGAGTTGCGAAGACCGTGCTTGGCGATCTTAGCCTTGAGCTCTGCCCAGTCCCA 49448 Query 147072 CATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACT 147131 | ||| ||||| ||| ||||||||||||||| ||| | || | ||| || Sbjct 49447 GAGGTCCGAAGGCGTGACGCCCCACATGTCGTACTGCAGCTCACCCTGCGAGGCAGGCGA 49388 Query 147132 GCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAGCGC 147191 ||||||| | || |||| | |||| ||| |||| || || | ||||| || Sbjct 49387 GCCAGCGTAGGTCTCGTAGGTGCCGTGCTCCTGAGCCAGCTCGCACGATCGTTCGAGGGC 49328 Query 147192 TCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGG--ACGGTCGCTTCTTCGCTCTCG 147249 | | ||| ||||| || ||| ||| ||| ||| ||| | || || ||| Sbjct 49327 AGCGTGGTAGATGGTCTCAAAGATCTGTACGTTGAGGCGACGAGC-CTCGGGCGA-CTCA 49270 Query 147250 TAAGGCATA-CGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGG 147308 ||||| || | || | || ||||| ||||| | ||| |||| ||||| || || || Sbjct 49269 -AAGGCGTAGCCCATGATCATGAAGGCGTCGGCGAGACCTTGGACACCGATACCAATGGG 49211 Query 147309 TCGATGCTTTTCGTTG---CTGCGCTTCGCGCTCGCTATGGGATAGTGGTTGCGATCAAT 147365 || || |||| ||||| | | |||| | ||||||| |||| ||||| Sbjct 49210 GCGGTGGCGCATGTTGGATCTGCGGGCCTC-CTCGACA--GGATAGTAGTTGATGTCAAT 49154 Query 147366 AATCTTGTTGAGGTTAC-GCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCAT 147424 ||||||||||| || ||| | | || | | | | || || ||| || | Sbjct 49153 GATCTTGTTGAGATTCTTGCAG-ATGGCCTTGGCGACGCTGTGAAGACGCTTGAAGTCGT 49095 Query 147425 AAGTCCCGTCTT--CGACACGTACGC-ATTGGTT--CACGGCGATAGACGCCAGATTGCA 147479 | ||| || ||||| | || | ||| || |||||| || ||||| ||||| Sbjct 49094 A-----CGTTTTGGCGACAGGGTCGATAAAGGTGGGCAGGGCGATTGAGGCCAGGTTGCA 49040 Query 147480 GACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTT 147539 |||||| ||| |||| | ||||||||| | ||| |||| ||||| |||| ||| || Sbjct 49039 GACGGCAACCTCGTCGGGGGCGCTGTACTCGATGATCTCGGTGCACAAGTTGGAGCACTT 48980 Query 147540 TATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTA 147599 ||| || | || | ||| ||||| || || ||| ||||| ||| |||| ||| | Sbjct 48979 GATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCGTCCTTGTAGAGGATGAA 48920 Query 147600 CGGTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTA-TGCAGGTCCTGCGCTCGCA 147658 || |||||||||| || || | ||| | || || | |||||| | Sbjct 48919 GGGGTTGCCGGTCTCGGTCTGGCACTCGAGGAT-GGCGTACCAGAGCTTCTGCGCCTTGA 48861 Query 147659 CCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGC 147718 | || |||| |||||| ||||| |||||||| | |||||||||||||||| Sbjct 48860 CGGTTCGCTTGGAGCGACCCTCGGCCTCGTAGCGCTCGTAGAGGCGCTCAAACTCGTCGC 48801 Query 147719 CGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCG 147778 ||||||| ||||| || || || |||| | || ||||| |||||||| | ||| | Sbjct 48800 CGTAGCAGTCGGCGAGACCTGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGTTCT 48741 Query 147779 CGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATC----GCGC 147834 | || | ||| || ||||| || ||||| || ||||| | || || || | Sbjct 48740 GCTCGACCCTCTTCATGAAGAGATCGGGGACCCAGAGGGCGTAGAAGAGCTCACGGGCAC 48681 Query 147835 GCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAATTAAGCACGCTATAGATGTCGGCG 147894 || | | |||| | || | ||||| | || || | | ||| || | | Sbjct 48680 GCATCTC-TTCCTTGCCGTGGTTTTTGCG---GAGATCGAGGAACTCAAAGACATCCGAG 48625 Query 147895 TGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGACA 147951 ||||| || |||||||||| ||| | ||||| |||| || || ||||||||||| Sbjct 48624 TGCCATGGCTCAATGTAGATGGCAAAGGCACCCGGACGCTTGTTGCCACCCTGGTCGACG 48565 Query 147952 TGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCG---CTCGCAGTGCCG 148008 | ||| | |||||||||| ||||| | ||||||| | | ||| || || ||| Sbjct 48564 TAGCGGGCAGTGTTGTTAAAGACGCGGAGCATGGGTACGATACCGTTACTGACA---CCG 48508 Query 148009 TTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCG 148068 |||||| ||| | |||| | || | ||| | ||| | || || || Sbjct 48507 TTGGTGCCGGCGATGTACGAGCCGGTACCGCGAATGCAGTGGATGTTGAGACCGATACCA 48448 Query 148069 CCGCCGTACTTTGATATGGCAGCGCAATCGCC--CAATGTCGTGTAGATGCCGTCGATGC 148126 ||| || ||| || || || ||| || | | || ||||||||||||||| Sbjct 48447 CCGGCGGTCTTGGAGAT--CATGGCACACGTCTTGAGCGTGTCGTAGATGCCGTCGATCG 48390 Query 148127 TGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCG 148186 ||||| || | | | || || ||||| | | || || | || || || Sbjct 48389 AGTCGTCCTTCATGGTGACCAGGAAGCACGACGAGAGCTGTGGGTGTGGTGTACCAGCGT 48330 Query 148187 AGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAA 148246 ||| |||||||| ||||| ||||| |||| || ||| | || ||||| | Sbjct 48329 TGAAGAGGGTGGGCGAGGCGTGGGTAAAGTATTTCTGGGACATGAGATTGTAAGTCTCGA 48270 Query 148247 TAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTG 148306 | ||| |||||||| | ||||| ||||| | ||||| |||||||||||||| || | Sbjct 48269 TGGCGCTCTCGATGTCTTGACCGTGGATGCCAACAGCGACACGCATGAGCATGTGTTGAG 48210 Query 148307 GTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAAC 148366 | || || || || | |||||| ||| || || | ||||| || ||| | | Sbjct 48209 GACGCTCAGCGACCTTTCCGTTGATGCGGAGCAGGTAGGAACGCTCGAGCGTCTTGAATC 48150 Query 148367 CAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408 | ||| | ||||| | ||||| |||| || |||||||| Sbjct 48149 CGAAGAAGTTGTAGTGGAAATCGCGCTCATAGATGATGGCCG 48108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476575859279520