Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq4 102 7e-17 seq21 87.8 2e-12 >seq4 Length=437454 Score = 102 bits (112), Expect = 7e-17 Identities = 179/261 (69%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 138144 GTTGAGGCCGATGCCGCCTCCGTGTTTAGATATCATGGCACAATCGTTGAGAGTTCTATA 138203 |||||| ||||| || || || || || ||||||||||| ||||| || || Sbjct 48463 GTTGAGACCGATACCACCGGCGGTCTTGGAGATCATGGCACACGTCTTGAGCGTGTCGTA 48404 Query 138204 GATGCCGTTTATGCTGTCTTCCTGGATGTTGAGTAGATAACACGACGACATTTGAGGCAT 138263 |||||||| || ||| |||| ||| ||| || | |||||||| | || || Sbjct 48403 GATGCCGTCGATCGAGTCGTCCTTCATGGTGACCAGGAAGCACGACGAGAGCTGTGGGTG 48344 Query 138264 TTTCATGCCAGCCGAGAATAGAGTGGGACTAGCGTGGGTAAACATTTTCGAGCGCATCAA 138323 | | ||||| ||| || ||||| ||||||||||| |||| | ||| | Sbjct 48343 TGGTGTACCAGCGTTGAAGAGGGTGGGCGAGGCGTGGGTAAAGTATTTCTGGGACATGAG 48284 Query 138324 TCTATATGACTCGATCGCACTCTCGATATCATCACCATGAATCTGAAGAGCGACACGCAT 138383 | || | |||||| || |||||||| || | ||| || || || |||||||||||| Sbjct 48283 ATTGTAAGTCTCGATGGCGCTCTCGATGTCTTGACCGTGGATGCCAACAGCGACACGCAT 48224 Query 138384 CAGCATGTGTTGAGGTCTCTC 138404 |||||||||||||| | ||| Sbjct 48223 GAGCATGTGTTGAGGACGCTC 48203 >seq21 Length=224232 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/182 (71%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 110712 GCTCGATGATATTATTGTTCACGATGACGTCGGCGGCAGCGAAAAAGGCGAGAACGTGTT 110771 |||||| | || | ||| ||||| |||||| || ||||| || || || ||||| Sbjct 32788 GCTCGACTAGGTTCTCGTTGACGATACCGTCGGAAGCGGCGAAGAAAGCAAGGACGTGGG 32847 Query 110772 TAAGAAAGAATCGTTCCTTGTCGTTCAGTTTATTGTTCCAGTCTTCAAAGTCCTTGGACA 110831 | |||| || || |||||||| || || |||| |||||| | || |||||||| | Sbjct 32848 AGATAAAGTGGCGCTCGTTGTCGTTGAGCTTGTTGTCCCAGTCGTGAAGATCCTTGGAAA 32907 Query 110832 TGTCGATCTCTTCGACCTTCCAGTGACAATCGACCGCCTTCTTGTACGATTGCCAAAGAT 110891 ||||||||| || | ||||| || | | |||||||||||| ||||| |||| Sbjct 32908 GGTCGATCTCCTCTGCGGTCCAGAAGGAAGCCTCGGCCTTCTTGTACATTTGCC--AGAT 32965 Query 110892 CT 110893 || Sbjct 32966 CT 32967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445061396250240