Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq21 251 1e-60 seq4 172 8e-37 seq31 107 3e-17 seq42 95.1 2e-13 >seq21 Length=224232 Score = 251 bits (278), Expect = 1e-60 Identities = 384/527 (73%), Gaps = 25/527 (5%) Strand=Plus/Minus Query 1455762 TCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCC 1455821 ||| | |||| | ||| ||| |||||||| || ||||||||||| ||||| |||||||| Sbjct 32978 TCCCCCACCA-CAGATCTGGCAAATGTAC-AAGAAGGCCGAGGCTTCCTTCTGGACCGCA 32921 Query 1455822 GAGGAGGTCGACCTCGGCGCCGA----CACGGTCCACTGGGTGTC---GCTGAGCGACGA 1455874 |||||| ||||||| | || |||| |||||| ||| | |||| | Sbjct 32920 GAGGAGATCGACCTTTCCAAGGATCTTCACG----ACTGGGACAACAAGCTCAACGACAA 32865 Query 1455875 CGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGG 1455934 ||||||||| || ||| |||||||| || ||| |||||||| ||| || ||||| Sbjct 32864 CGAGCGCCACTTTATCTCCCACGTCCTTGC-TTTCTTCGCCGCTTCCGACGGTATCGTCA 32806 Query 1455935 CCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAAT-TGCCAGAGGCACGTTTGTTT 1455993 ||||||||| | || || || | || || || |||| ||||| || | || Sbjct 32805 ACGAGAACCTAGTCGAGCGTTTCAGCTCCGAAGTTCAGGCTGCC-GAGGCCCGCTGCTTC 32747 Query 1455994 TACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGAC 1456053 ||||| ||||||||| || || ||||||||||| || |||||||||||||| |||||| Sbjct 32746 TACGGTTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCGCTCCTCATCGAC 32687 Query 1456054 ACCTACGT-CAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCC 1456112 | ||| | | | ||||| | || || ||||||| |||| |||| || | || Sbjct 32686 TCGTACATTCGCGAACCCGAGC-AGCGTGAATTCCTCTTTGACGCCGTCGAGACCATCCC 32628 Query 1456113 -GTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACA 1456171 |||| | | | | |||||||||||||| | ||||||| | | ||| | | || Sbjct 32627 CGTCG-TCAAGCAGAAGGCCGACTGGGCTCTTCGATGGATCAGCGAC-AGGCGCGCCAC- 32571 Query 1456172 CTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTT 1456230 |||||||||||| ||||| | || ||||| |||||||||||||| ||||||||| || Sbjct 32570 CTTTGCCGAGCGTCTCGTTGCTTTCGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 32511 Query 1456231 CTGCG-CCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTT 1456276 ||| ||||||| |||||||||||||| || ||||||||||||||| Sbjct 32510 -TGCATCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTT 32465 >seq4 Length=437454 Score = 172 bits (190), Expect = 8e-37 Identities = 214/291 (74%), Gaps = 4/291 (1%) Strand=Plus/Plus Query 259894 CATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCG 259953 |||||| ||| | | || ||| || ||||||| ||||| || || || || || | Sbjct 48286 CATGTCCCAGAAATACTTTACCCACGCCTCGCCCACCCTCTTCAACGCTGGTACACCACA 48345 Query 259954 CCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTA 260013 ||| ||| ||||||||||| ||| | |||||||| ||| |||||||| |||||||| Sbjct 48346 CCCACAGCTCTCGTCGTGCTTCCTGGTCACCATGAAGGACGACTCGATCGACGGCATCTA 48405 Query 260014 TGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGC 260073 |||||||||||| ||| || | ||||||||| | ||||| || |||||| | | Sbjct 48406 CGACACGCTCAAGACGTGTGCCATGATCTCCAAGACCGCCGGTGGTATCGGTCTCAACAT 48465 Query 260074 ACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACG--GCCAGTCCAACGGC 260131 ||| | |||| | ||| | ||| | || |||||||||| | |||| ||||| Sbjct 48466 CCACTGCATTCGCGGTACCGGCTCGTACATCGCCGGCACCAACGGTGTCAGT--AACGGT 48523 Query 260132 CTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 | || |||||||| ||||| |||||| |||| || ||||||||||||||| Sbjct 48524 ATCGTACCCATGCTCCGCGTCTTTAACAACACTGCCCGCTACGTCGACCAG 48574 Score = 114 bits (126), Expect = 2e-19 Identities = 299/452 (66%), Gaps = 20/452 (4%) Strand=Plus/Plus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 || ||| |||||| ||| ||||||||| |||| | || || |||||| | || || Sbjct 48575 GGTGGCAACAAGCGTCCGGGTGCCTTTGCCATCTACATTGAGCCATGGCACTCGGATGTC 48634 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 | | | || || ||| || ||||||||||||| || ||| || || || | Sbjct 48635 TTTGAGTTCCTCGATCTCCGCAAAAACCACGGCAAGGAAG----AGATGCGTGCCCGTGA 48690 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGT-GACCGG--C 261964 | ||||| |||| ||| ||| ||| || || ||| | ||| || | | | Sbjct 48691 G--CTCTTCTACGCCCTCTGGGTCCCCGATCTCTTCATGAAGAG---GGTCGAGCAGAAC 48745 Query 261965 CGCGACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCG 262024 |||||||||||||| | ||||| |||| || || || ||| ||||| |||| Sbjct 48746 GGCGACTGGTCGCTCATGTGCCCCAACGAGTGCCCAGGTCTCGCCGACTGCTACGGCGAC 48805 Query 262025 GCCTTTGACGCCCTCTATGAGNNNNNNNNNNNNNNNNNNNNNNC---GCGGACCGTCGTG 262081 | ||||| |||||| ||| | ||| |||||| | Sbjct 48806 GAGTTTGAGCGCCTCTACGAGCGCTACGAGGCCGAGGGTCGCTCCAAGCGAACCGTCAAG 48865 Query 262082 CCCGCACGACAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTAC 262141 | ||| || || |||||| ||||| ||| | ||| | ||||||||||| |||| | Sbjct 48866 GC-GCA-GA-AGCTCTGGTACGCCATCCTCGAGTGCCAGACCGAGACCGGCAACCCCTTC 48922 Query 262142 ATGGTCTACAAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACA 262201 || ||||||||||||| | ||||| | ||||||||| ||||||| ||||||| | | Sbjct 48923 ATCCTCTACAAGGACGCTGCCAACCGCAAGAGCAACCAGAAGAACCTCGGCACCATCA-A 48981 Query 262202 GAG-GCCAACCTGTGCACCGAGATCGTCCAGT 262232 | | ||||| |||||||||||||| || ||| Sbjct 48982 GTGCTCCAACTTGTGCACCGAGATCATCGAGT 49013 Score = 98.7 bits (108), Expect = 1e-14 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 263177 TCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATTGATATGGCGG 263236 ||||| |||| ||||||||| |||||| | | | || | ||| || ||||| | Sbjct 49740 TCAAGAAGCTCTACAAGACCGTCTGGGAGATCAGCCAGAAGGCCATCATCGACATGGCCG 49799 Query 263237 CCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCGACCCGA 263296 ||||||||| ||| || |||| |||||||||||| | | ||| | | || | Sbjct 49800 CCGACCGCGGTGCCTTCATCTGCCAGTCGCAGTCGCTCAACATCCATCTCTCGGCGCCCA 49859 Query 263297 CG-GCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCAAGACTGGC 263355 || | | ||| |||| ||||||||| ||| | ||| || |||||||| || Sbjct 49860 CGTTCGGCCAGC-TCACCTCGATGCACTTCTACGGCTGGAAGAAGGGTCTCAAGACCGGT 49918 Query 263356 ATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTC 263406 | ||||| ||||||||| ||| ||| |||||||||| ||||||||| || Sbjct 49919 ACCTACTACCTGCGCACCAAGCCTGCTTCCAACGCCATCCAATTCACCCTC 49969 >seq31 Length=170168 Score = 107 bits (118), Expect = 3e-17 Identities = 171/244 (70%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 |||||| ||| || ||| || ||||||||||| |||||| || | | ||| Sbjct 46088 TACTCGACCTACATTTACCGTGTCCTCAAGCAGGTCCACCCCGACACTGGT-----ATC- 46035 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 || |||||| ||||| | || | ||||| ||||| | ||||| |||| ||||||| | Sbjct 46034 TCGAACAAGGCCATGGCCATTCTCAACTCCTTTGTTCAGGACATCTTCGAGCGCATCGCC 45975 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 ||||||||| || || || ||||||| || ||| |||| |||||| Sbjct 45974 ACCGAGGCCTCCAAGCTCGCTTCCTACAACAAGAAGTCGACCATCTCGTCGCGAGAGATC 45915 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 ||||| ||||| ||||| ||| | | ||| || || ||| ||||||| |||| || || Sbjct 45914 CAGACTGCCGTCCGCCTCATCCTCCCCGGTGAGCTTTCCAAGCACGCCATCTCGGAAGGT 45855 Query 725139 ACCA 725142 |||| Sbjct 45854 ACCA 45851 >seq42 Length=144005 Score = 95.1 bits (104), Expect = 2e-13 Identities = 183/265 (69%), Gaps = 4/265 (2%) Strand=Plus/Plus Query 332876 CGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTG-TTGCAGGC 332934 ||||| ||||| || || ||| | || ||||||| | ||| | || ||||| || Sbjct 62179 CGCAGAATGGCGCAGCGCGACTGGATGGGTTCGATGATC-TTGTTGCTCTGGTTGCAAGC 62237 Query 332935 CAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTGGGC 332994 | | || | || ||||||| || | ||||||||| || ||| ||||| || || Sbjct 62238 AAAGCAGAATCTGGTGGTATTGGAATAGATCTCCATGGTCCTCCTGAGTGCCTGCTGTGC 62297 Query 332995 CGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGC-GCCCGTGCGGCA 333053 ||||| || | || |||||||||||| | ||||||||||||||| | ||||| |||| | Sbjct 62298 AGCCGGTGTCATGCTGTCGGCCTCGTCCAAGATGATGATCTTGTGCCTGCCCG-GCGGAA 62356 Query 333054 GATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCACGCCGCGCT 333113 | || | ||| || ||||| | || || || || || || || |||| Sbjct 62357 GCGAGACTTTCTTCTGTGCAAACGTCTTGATCTTGTTTCGTACCACATCGACACCTCGCT 62416 Query 333114 CGTCCGACGCGTTGAGTTCGAGCAC 333138 |||| || || |||||||| || || Sbjct 62417 CGTCGGAGGCATTGAGTTCCAGGAC 62441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177239047696984