Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq67 122 8e-23 seq10 120 3e-22 >seq67 Length=99859 Score = 122 bits (134), Expect = 8e-23 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 35534 TGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGC 35593 || || || |||||||| ||||||||||| || | | || || |||| ||||||||| Sbjct 37888 TGCAAAGTGCTCTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGACCGTCTTCCAGCTGC 37947 Query 35594 TTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTT 35653 ||||| ||||| ||||| ||||||||||| | || | | ||||||||| |||||| Sbjct 37948 TTACCGGCAAAGATCAAGCGCTGCTGGTCAGGTGGGATACCTTCCTTGTCCTGGATCTTG 38007 Query 35654 TGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712 ||| | |||| | | |||||| || || || |||| ||| ||||| || ||||| Sbjct 38008 GCCTTGA-CGTTGTCAATCGTGTCCGAAGACTCGACTTCCAACGTAATCGTCTTTCCCGT 38066 Query 35713 CAAAGTTTTCACAAATATCTGCAT 35736 | || || ||||| |||||||| Sbjct 38067 GAGTGTCTTTACAAAGATCTGCAT 38090 Score = 118 bits (130), Expect = 1e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 35534 TGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGC 35593 || || || |||||||| |||||||||||||||| | || || | || |||| |||| Sbjct 37660 TGCAAGGTGCTCTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGACCATCTTCCAACTGC 37719 Query 35594 TTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTT 35653 ||||| ||||| |||| ||||||||||| | || | | |||||||||| |||||| Sbjct 37720 TTACCAGCAAAGATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCCTGGATCTTG 37779 Query 35654 TGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712 ||| | |||| | | |||||| || || || |||| ||||| ||||| || || Sbjct 37780 GCCTTGA-CGTTGTCAATCGTGTCCGAAGACTCGACTTCCAATGTGATGGTTTTGCCAGT 37838 Query 35713 CAAAGTTTTCACAAATATCTGCAT 35736 | || || ||||| |||||||| Sbjct 37839 GAGCGTCTTGACAAAGATCTGCAT 37862 Score = 114 bits (126), Expect = 1e-20 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| ||||||||||| || | | ||| || |||| || |||||||| || ||||| Sbjct 38128 TCCTTCTGAATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCTGCAAAG 38187 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | |||||||| || | ||||| || |||||||||| |||||| ||| | ||| Sbjct 38188 ATGAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTT 38246 Query 35666 G-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | |||||| ||||| ||||| | || || || || || ||||| || || || Sbjct 38247 GTCGATCGTGTCCGAAGATTCGACCTCGAGGGTAATGGTCTTGCCAGTCAAGGTCTTGAC 38306 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 38307 AAAGATCTGCAT 38318 >seq10 Length=322828 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| |||| ||| || || | || || |||||||| || ||||| Sbjct 156375 CTCCTTCTGAATGTTGTAGTCGGACAAAGTGCGGCCATCCTCGAGCTGCTTTCCAGCAAA 156434 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | |||| || ||||||||| ||||| ||| | || Sbjct 156435 GATGAGTCGCTGCTGGTCAGGTGGAATGCCTTCCTTGTCCTGAATCTTGGCCTTGA-CGT 156493 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | ||||| |||||| ||||| | |||||||| || || ||||| || || | Sbjct 156494 TGTCGATGGTGTCCGACGATTCGACCTCGAGAGTGATCGTCTTGCCGGTCAAGGTCTTGA 156553 Query 35724 CAAATATCTGCAT 35736 |||| |||||||| Sbjct 156554 CAAAGATCTGCAT 156566 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| || | | ||| || |||| || ||||||||||| ||||| Sbjct 83702 CTCCTTCTGAATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCGAGCTGCTTACCGGCAAA 83643 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | || | | |||||||||| |||||| ||| | | | Sbjct 83642 GATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATT 83583 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || || ||||| | ||||| || |||||||| | || || || Sbjct 83582 GTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGAC 83523 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 83522 AAAGATCTGCAT 83511 Score = 98.7 bits (108), Expect = 9e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||| | | || || |||| || |||||||| || ||||| Sbjct 156603 CTCCTTCTGGATGTTGTAATCAGAGAGCGTGCGGCCGTCTTCGAGCTGCTTGCCGGCAAA 156662 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | |||||||| || | |||| | |||||| ||| |||||| ||| | || Sbjct 156663 GATGAGTCGCTGCTGATCAGGTGGAATACCCTCCTTATCCTGGATCTTGGCCTTGA-CGT 156721 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | |||||| || || ||||| | ||||| || || ||||| | ||| || | Sbjct 156722 TGTCAATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGAGTCTTGA 156781 Query 35724 CAAATATCTGCAT 35736 |||| |||||||| Sbjct 156782 CAAAGATCTGCAT 156794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450760173654560