Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq4 168 7e-37 seq67 152 5e-32 seq10 140 3e-28 seq18 105 7e-18 >seq4 Length=437454 Score = 168 bits (186), Expect = 7e-37 Identities = 915/1446 (63%), Gaps = 35/1446 (2%) Strand=Plus/Plus Query 7537 ATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGTGGCGGTGGGCATT 7596 |||||||| | ||| || || |||||||||||| |||| || || || ||||| Sbjct 48185 ATCAACGGAAAGGTCGCTGAGCGTCCTCAACACATGCTCATGCGTGTCGCTGTTGGCATC 48244 Query 7597 CACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTCTTTGAAACAGTTT 7656 ||||| ||||||| || |||| | || || ||| | | ||||| |||| | ||| Sbjct 48245 CACGGTCAAGACATCGAGAGCGCCATCGAGACTTACAATCTCATGTCCCAGAAATACTTT 48304 Query 7657 ACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACA-AACGCGCCTCAATTGTCCTCGTG 7715 || ||||| ||||||||| | || ||| || ||| || | || || | || ||||| Sbjct 48305 ACCCACGCCTCGCCCACCCTCTTCAACGCTGGTACACCACAC-CCACAGCTCTCGTCGTG 48363 Query 7716 TTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACACGCTGCGCGA-TT 7774 || || | |||||| || ||| ||||||||||| ||| ||||||| | || | Sbjct 48364 CTTCCTGGTCACCATGAAGGACGACTCGATCGACGGCATCTACGACACGCT-CAAGACGT 48422 Query 7775 GCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACGACGTGCGCGCCA 7834 | |||| || ||||| || ||| || || ||||| ||| | || | | |||| | Sbjct 48423 GTGCCATGATCTCCAAGACCGCCGGTGGTATCGGTCTCAACATCCACTGCATTCGCGGTA 48482 Query 7835 ACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAG---CGGTTTAGAGCCCATGTTGC 7891 ||| ||||| ||||||||| | ||| |||| | | |||||| | | Sbjct 48483 CCGGCTCGTACATCGCCGGCACCAACGG---TGTCAGTAACGGTATCGTACCCATGCTCC 48539 Query 7892 GCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGG---AAAGCGCAAAGGCGCCG 7948 |||| || || ||| | | || | || |||||||| || ||||| || ||| Sbjct 48540 GCGTCTTTAACAACACTGCCCGCTACGTCGACCAGGGTGGCAACAAGCGTCCGGGTGCCT 48599 Query 7949 CTGCCATCTATTTGGAGCCGTGGCACGCGGACATTTACGCAGTGCTAAATCTGCGTCGCA 8008 ||||||||| | ||||| |||||| |||| | | | | || |||| || | Sbjct 48600 TTGCCATCTACATTGAGCCATGGCACTCGGATGTCTTTGAGTTCCTCGATCTCCGCAAAA 48659 Query 8009 ACATGGGTTGCGAAGACAGCAAAGCGCGCGATCTATTCTTCGGATTGTGGGTGCCCGATC 8068 || || ||||| | || || || || |||| || | ||||| ||||||| Sbjct 48660 ACCACGGCAAGGAAGAGATGCGTGCCCGTGAGCTCTTCTACGCCCTCTGGGTCCCCGATC 48719 Query 8069 TGTTTATGAGGCGCGTTCATTTCGACGCACAATGGTCGCTCATGTGCCCCGATCGTTGCC 8128 | || |||| | | || | ||| | |||||||||||||||||| | |||| Sbjct 48720 TCTTCATGAAGAGGGTCGAGCAGAACGGCGACTGGTCGCTCATGTGCCCCAACGAGTGCC 48779 Query 8129 CTTTATTAAAAAACGTTTACGGTTCAAAATTTGAACAATTGTACAAACAATACGAACACG 8188 | | || ||||| | ||||| | | ||| | | ||||| || Sbjct 48780 CAGGTCTCGCCGACTGCTACGGCGACGAGTTTGAGCGCCTCTACGAGCGCTACGAGGCCG 48839 Query 8189 ACGG-CGCGTACGTGCGGCAAGTGAAAGCGCGCGACCTGCACCGCGCCATTATCGAATGT 8247 | || ||| | | ||| || || |||| | || |||||| |||| || Sbjct 48840 AGGGTCGC-TCCAAGCGAACCGTCAAGGCGCAGAAGCTCTGGTACGCCATCCTCGAGTGC 48898 Query 8248 CAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAACGCCAAAAGCAAT 8307 || | ||| ||||| | || | ||| || ||||| |||||| |||| ||| ||||| Sbjct 48899 CAGACCGAGACCGGCAACCCCTTCATCCTCTACAAGGACGCTGCCAACCGCAAGAGCAAC 48958 Query 8308 CAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATTGTACAGTACAGC 8367 || | ||| | |||||||| ||| ||| ||||| | || || | |||||||| Sbjct 48959 CAGAAGAACCTCGGCACCATCAAGTGCTCCAACTTGTGCACCGAGATCATCGAGTACAGC 49018 Query 8368 GCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGTGTGTTTAAACGCGTTCGTTGAT 8427 || |||||||| || ||||| ||||| || || || | | || | || || Sbjct 49019 GCCCCCGACGAGGTTGCCGTCTGCAACCTGGCCTCAATCGCCCT----GCCCACCTTTAT 49074 Query 8428 CGACGCT----CAAACACTTACGACTTTGAACAATTGAAAAACGCCGTGCAAGTGA-CGG 8482 |||| || | || || |||||||| | | | | | || || | | | | | Sbjct 49075 CGACCCTGTCGCCAAAACGTACGACTTCAAGCGTCTTCACAGCGTCGCCAAGGCCATCTG 49134 Query 8483 TACGCAATTTAGATCGCATCATTGATGTCAATTTTTATCCCTTGGAAGAAGCGCGCGTAT 8542 | | ||| | | |||||||| |||| | ||||| | || || || ||| || Sbjct 49135 CAAG-AATCTCAACAAGATCATTGACATCAACTACTATCCTGTCGAGGAGGCCCGCAGAT 49193 Query 8543 CGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGCCGACGCGTTTGCCA 8602 | |||||||||||| | ||| |||| | || || |||||||| |||||||| || | Sbjct 49194 CCAACATGCGCCACCGCCCCATTGGTATCGGTGTCCAAGGTCTCGCCGACGCCTTCATGA 49253 Query 8603 TGTTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAACATAAAAATAGCGGAAA 8662 | || || | ||| || | || || || |||||| || | || || | Sbjct 49254 TCATGGGCTACGCCTTTGAGTCGCCCGAGGCTCGTCGCCTCAACGTACAGATCTTTGAGA 49313 Query 8663 CGGTGTATTACGGCGCATTAGAAGCCAGC-TGTCAACTTGCCCGAGAATTGGGCACGTAC 8721 | | || ||| || | ||| | | | || | || || | || ||||| ||| Sbjct 49314 CCATCTACCACGCTGCCCTCGAA-CGATCGTGCGAGCTGGCTCAGGAGCACGGCACCTAC 49372 Query 8722 GAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATACGACATGTGGAATGTC 8781 || | ||||| ||| |||||| | || |||| |||||||||||| ||| Sbjct 49373 GAGACCTACGCTGGCTCGCCTGCCTCGCAGGGTGAGCTGCAGTACGACATGTGGGGCGTC 49432 Query 8782 ACGCC----CACCTCTTTGTGGAATTGGAGCGATTTGAAACGCAAAATTGCTCAATTCGG 8837 ||||| ||||| ||| | ||| || | || || || || | ||| Sbjct 49433 ACGCCTTCGGACCTC----TGGGACTGGGCAGAGCTCAAGGCTAAGATCGCCAAGCACGG 49488 Query 8838 TTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCTCAAATAATGGG 8897 | | ||||| ||||| ||| | ||| ||||| || ||| |||| ||| || |||| Sbjct 49489 TCTTCGCAACTCGCTCTTGCTCGCTCCTATGCCTACTGCCTCGACCAGTCAGATCTTGGG 49548 Query 8898 AAACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTACGTGAGACGAGTGTTGGCCGG 8957 |||||| | ||| ||||| | |||| |||| | ||| | | || ||| | ||||| Sbjct 49549 TTTCAACGAGTGCTTCGAGCCTTACACCTCCAACATCTACTCGCGTCGTGTGCTCGCCGG 49608 Query 8958 CGATTT 8963 || || Sbjct 49609 TGAGTT 49614 >seq67 Length=99859 Score = 152 bits (168), Expect = 5e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||||||||| || ||||| || || |||||||| |||||||||||||| Sbjct 38092 CCACCGCGGAGTCGCAAGACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCCGAG 38151 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| |||||||| ||||||||||| || | |||||||||||| || || Sbjct 38152 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCTGCAAAGATGAGACGCTGCTGATCAGGAGGA 38211 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| ||| | ||||| || ||||| || Sbjct 38212 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAAGATTCGACC 38271 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| |||||||| || || || || || || || || || ||||| Sbjct 38272 TCGAGGGTAATGGTCTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 38318 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || || |||||||| || ||||||||||| | ||| | ||| |||||||| Sbjct 38344 TGGAGGGTCGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCGTCCTCGAGCTGC 38403 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || || || || | || ||||||||||| || ||||| || || || || || || Sbjct 38404 TTTCCAGCGAAGATGAGGCGTTGCTGATCGGGAGGAATGCCCTCCTTGTCCTGGATCTTG 38463 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||||| ||| | |||||||| || || || ||||| || ||||| ||||| || Sbjct 38464 GCCTTGACGTTGTCGATCGTGTCGGAAGACTCTACCTCGAGGGTGATGGTCTTACCAGTC 38523 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 | ||| || || || || ||||| Sbjct 38524 AGAGTCTTGACAAAGATCTGCAT 38546 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | | ||| | |||||||| | ||| ||||| |||||||||||||| Sbjct 37864 CCTCCGCGCAATCGAAGTACGAGGTGCAAAGTGCTCTCCTTCTGAATGTTGTAGTCCGAG 37923 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || ||| || ||||| || || ||||| ||||| |||||||| || || || Sbjct 37924 AGCGTGCGACCGTCTTCCAGCTGCTTACCGGCAAAGATCAAGCGCTGCTGGTCAGGTGGG 37983 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || || || || ||||| ||| | ||||| || || || || Sbjct 37984 ATACCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATCGTGTCCGAAGACTCGACT 38043 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | ||||| || || || || | || || || || || ||||| Sbjct 38044 TCCAACGTAATCGTCTTTCCCGTGAGTGTCTTTACAAAGATCTGCAT 38090 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 || || || | ||| || | |||||||| | ||| ||||| ||||||||||| ||| Sbjct 37633 TTACCGCCACGGAGACGGAGGACGAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAATCG 37692 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 || ||| || || || | ||| || || ||||| |||| ||||||||| || || Sbjct 37693 GAAAGAGTGCGACCATCTTCCAACTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGT 37752 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || || || || || || || || || ||||| ||| | ||||| || || || Sbjct 37753 GGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATCGTGTCCGAAGACTCG 37812 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | || |||||||| || || | || || || || || ||||| Sbjct 37813 ACTTCCAATGTGATGGTTTTGCCAGTGAGCGTCTTGACAAAGATCTGCAT 37862 >seq10 Length=322828 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||| |||| || ||||| || ||||| ||||| ||||||||||||||| Sbjct 156340 CCTCCACGGAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAC 156399 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || |||||||| || || ||||| || | |||||||| || || || Sbjct 156400 AAAGTGCGGCCATCCTCGAGCTGCTTTCCAGCAAAGATGAGTCGCTGCTGGTCAGGTGGA 156459 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || ||||| || ||||| ||| | ||||| |||||||| || Sbjct 156460 ATGCCTTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGACGATTCGACC 156519 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| || || || ||||| || || || || || || ||||| Sbjct 156520 TCGAGAGTGATCGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 156566 Score = 123 bits (136), Expect = 3e-23 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||||||||| || || || ||||| |||||||||||||| || ||| | Sbjct 83728 AGGCGAAGCACGAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAAAGGGTACGG 83669 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| |||||||| || || ||||| |||| |||||||| ||||| || || || || Sbjct 83668 CCGTCCTCGAGCTGCTTACCGGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATACCCTCC 83609 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| ||| | ||||| || || || || ||||| || Sbjct 83608 TTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTG 83549 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGT 134718 ||||| ||||| || | || || || || || ||||| |||| Sbjct 83548 ATGGTCTTACCCGTGAGGGTCTTGACAAAGATCTGCATCTTGT 83506 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 |||||||| ||||| || ||||| || |||||||| || | ||| | ||| ||| Sbjct 156586 ACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCAGAGAGCGTGCGGCCGTCTTCG 156645 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| ||||| || | ||||||||||| || || || || || || || || Sbjct 156646 AGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGATCAGGTGGAATACCCTCCTTATCCTGG 156705 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| ||| | |||||||| || || || ||||| || ||||| || Sbjct 156706 ATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTG 156765 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | ||| || || || || ||||| Sbjct 156766 CCCGTGAGAGTCTTGACAAAGATCTGCAT 156794 >seq18 Length=237310 Score = 105 bits (116), Expect = 7e-18 Identities = 135/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || || || ||||| || ||||||||||| | ||| | ||| ||| Sbjct 132602 ACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCG 132543 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| || || ||||| |||| |||||||| ||||| || || || || || || ||| Sbjct 132542 AGCTGCTTTCCGGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGA 132483 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| ||| | ||||| || || ||||| || || |||||||| ||| Sbjct 132482 ATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCCACCTCAAGGGTAATGGTCTTA 132423 Query 134685 CCGGTT 134690 || ||| Sbjct 132422 CCTGTT 132417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505360924708640