Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq21 96.9 5e-15 >seq21 Length=224232 Score = 96.9 bits (106), Expect = 5e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 39614 AAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTG 39673 |||||||| ||||| || || ||||| || | || | ||||| || || || Sbjct 32406 AAGCAGGCAAAGTCGGTGTGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTA 32465 Query 39674 AGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAG 39733 || || ||||| ||||||||||| |||||||| || |||| ||||| || || || ||| Sbjct 32466 AGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGATGCAAAGGAGCCCGAGAAG 32525 Query 39734 AAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTC 39771 |||||||| || || || || || ||||| || | ||| Sbjct 32526 AAGATGCCCTCGACGGCGGCGAAAGCAACGAGACGCTC 32563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686857865712480