Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq10 100 2e-16 seq67 96.9 3e-15 >seq10 Length=322828 Score = 100 bits (110), Expect = 2e-16 Identities = 120/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 27085 TGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACAC 27144 |||| ||||||||||||| || ||||| | ||||| ||||| ||||| || || | || Sbjct 156632 TGCGGCCGTCTTCGAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGATCAGGTGGAATAC 156691 Query 27145 CCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTA 27204 |||| ||||| ||||||| || | | | || | ||||| | || || || || | Sbjct 156692 CCTCCTTATCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGGACTCGACCTCGA 156751 Query 27205 GAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || | |||||||| ||||| || |||||||| ||||| Sbjct 156752 GGGTGATGGTCTTGCCCGTGAGAGTCTTGACAAAGATCTGCAT 156794 >seq67 Length=99859 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||| | ||||| || | || | || || || || ||||| |||||||| Sbjct 38092 CCACCGCGGAGTCGCAAGACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCCGAG 38151 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| |||| |||||||| || || || | ||||||||||| ||||| || || Sbjct 38152 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCTGCAAAGATGAGACGCTGCTGATCAGGAGGA 38211 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || ||||||| || | | | || | ||||| | | ||| || Sbjct 38212 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAAGATTCGACC 38271 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || | ||||| |||| || || |||||||| |||||| Sbjct 38272 TCGAGGGTAATGGTCTTGCCAGTCAAGGTCTTGACAAAGATCTGCATA 38319 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||||||||| || | ||| | || || || || || ||||| |||||||| Sbjct 37864 CCTCCGCGCAATCGAAGTACGAGGTGCAAAGTGCTCTCCTTCTGAATGTTGTAGTCCGAG 37923 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| ||||||| ||||| |||||||| | || | ||||| || || || || Sbjct 37924 AGCGTGCGACCGTCTTCCAGCTGCTTACCGGCAAAGATCAAGCGCTGCTGGTCAGGTGGG 37983 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| || || || ||||||| || | | | || | ||||| | | || ||| Sbjct 37984 ATACCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATCGTGTCCGAAGACTCGACT 38043 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | || || | || ||||| || || || |||||||| |||||| Sbjct 38044 TCCAACGTAATCGTCTTTCCCGTGAGTGTCTTTACAAAGATCTGCATA 38091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424903678836384