Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq4 266 4e-66 seq62 111 2e-19 seq21 105 8e-18 >seq4 Length=437454 Score = 266 bits (294), Expect = 4e-66 Identities = 920/1416 (65%), Gaps = 37/1416 (3%) Strand=Plus/Minus Query 110681 AACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCA 110740 |||||||| ||||| | | | ||||||||| | ||||| || || ||||| || Sbjct 49614 AACTCACCGGCGAGCACACGACGCGAGTAGATGTTGGAGGTGTAAGGCTCGAAGCACTCG 49555 Query 110741 TTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTA 110800 || ||||||||| || ||| ||||| || ||||| || || | ||| || ||| Sbjct 49554 TTGAAACCCAAGATCTGACTGGTCGAGGCAGTAGGCATAGGAGCGAGCAAGAGCGAGTTG 49495 Query 110801 CGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAGCTT-GGT 110859 |||||||| | || ||| ||||||| | ||||||| || | | || Sbjct 49494 CGAAGACCGTGCTTGGCGATCTTAGCCTTGAGCTCTGCCCAGTCCCAGAGGTCCGAAGGC 49435 Query 110860 TTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGT 110919 | || |||||||||| |||| ||| | || || || || || || || | |||| Sbjct 49434 GTGACGC-CCCACATGTCGTACTGCAGCTCACCCTGCGAGGCAGGCGAGCCAGCGTAGGT 49376 Query 110920 TTCATAGGAACCTTGGGCTTCAGCCAATTCACA-GCTCGCCTCCAGGGATGCGTGATACA 110978 || |||| || || | | ||||| || || | ||| || |||| ||||| || | Sbjct 49375 CTCGTAGGTGCCGTGCTCCTGAGCCAGCTCGCACGATCGT-TCGAGGGCAGCGTGGTAGA 49317 Query 110979 TGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGC 111038 |||| |||||||| | | || | || || || ||||| ||||||| Sbjct 49316 TGGTCTCAAAGATCTGTACGTTGAGGCGACGAGCCTCGGGCGACTCAAAGGCGTAGCCCA 49257 Query 111039 ACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATAT 111098 | || || | || ||||||||||| ||||| | |||||| || | ||| ||||| | Sbjct 49256 TGATCATGAAGGCGTCGGCGAGACCTTGGACACCGATACCAATGGGGCGGTGGCGCATGT 49197 Query 111099 TAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTT 111158 | || | || || ||| || ||||| | || ||||||||| ||| ||||| | Sbjct 49196 TGGATCTGCGGGCCTCCTCGACAGGATAGTAGTTGATGTCAATGATCTTGTTGAGATTCT 49137 Query 111159 TGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGT----GCGAGTCTCT 111214 || | ||| | || ||||| | | || | || |||| | Sbjct 49136 TGCAGATGGCCTTGGCGACGCTGTGAAGACGCTTGAAGTCGTACGTTTTGGCGA----CA 49081 Query 111215 TCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTA 111274 | || | | | || ||||||||||| |||| ||||| || || ||| || Sbjct 49080 GGGTCGATAAAGGTGGGCAGGGCGATTGAGGCCAGGTTGCAGACGGCAACCTCGTCGGGG 49021 Query 111275 TCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTT 111334 | ||||||| | || || || || |||||||| | ||| || || || | ||||| Sbjct 49020 GCGCTGTACTCGATGATCTCGGTGCACAAGTTGGAGCACTTGATGGTGCCGAGGTTCTTC 48961 Query 111335 TGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTC 111394 ||||| ||||| |||| || ||||||||||| ||| |||| | || ||||| ||| Sbjct 48960 TGGTTGCTCTTGCGGTTGGCAGCGTCCTTGTAGAGGATGAAGGGGTTGCCGGTCTCGGTC 48901 Query 111395 TGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCC 111453 || | | ||| || || | ||| | | || ||| || | || | |||| || || Sbjct 48900 TGGCACTCGAGGATGGCGTACCAGAGCTTCTGCGCCTTG-ACGGTTCGCTTGGAGCGACC 48842 Query 111454 CTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACC 111513 ||| |||||||| ||||||| |||||||| || || ||||| |||||| Sbjct 48841 CTCGGCCTCGTAGCGCTCGTAGAGGCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGACC 48782 Query 111514 TGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAA 111573 ||| || || || || | || ||||| | || | ||| |||| ||||||||| Sbjct 48781 TGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTCGACCCTCTTCATGAA 48722 Query 111574 AAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTG 111633 || || || | ||| |||| | ||||| || | || |||||| | || || Sbjct 48721 GAGATCGGGGACCCAGAGGGCGTAGAAGAGCTCACGGGCACGCATCTCTTCCTTGCCGTG 48662 Query 111634 GTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGC 111693 ||| || | || |||||||| | || ||||| |||||||||||||| |||| || Sbjct 48661 GTTTTTGCGGAGATCGAGGAACTCAAAGACATCCGAGTGCCATGGCTCAATGTAGATGGC 48602 Query 111694 GATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAA 111747 | | ||| ||||| ||| | || | || ||||| || ||| |||||| Sbjct 48601 AAAGGCACCC---GGACGCTTGTTGCCACCCTGGTCGACGTAGCGGGCAGTGTTGTTAAA 48545 Query 111748 TACGCGAAGCATTGGAATAATACCAT--CTGATTGACCATTTGT-CCCCCGA-ATACGAG 111803 ||||| ||||| || | ||||| | |||| ||| || || || ||| |||||| Sbjct 48544 GACGCGGAGCATGGGTACGATACCGTTACTGA--CACCGTTGGTGCCGGCGATGTACGAG 48487 Query 111804 ATTTATTGGCTCTCACAT-CA-TGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGAT 111861 | | | || || ||||||| | || ||||| || || ||| ||||| Sbjct 48486 ----CCGGTACCGCGAATGCAGTGGATGTTGAGACCGATACCACCGGCGGTCTTGGAGAT 48431 Query 111862 TTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGAT 111921 |||||| | | || || | ||||| |||| ||| ||||| ||||| ||| || Sbjct 48430 CATGGCACACGTCTTGAGCGTGTCGTAGATGCCGTCGATCGAGTCGTCCTTCATGGTGAC 48371 Query 111922 AAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGC 111981 |||||||| || | ||| || |||||||||||| ||||||||||| || | || Sbjct 48370 CAGGAAGCACGACGAGAGCTGTGGGTGTGGTGTACCAGCGTTGAAGAGGGTGGGCGAGGC 48311 Query 111982 GTGAATGAA-CATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTT 112040 ||| | || || | |||||||| | ||| ||||| | | | || ||||||| Sbjct 48310 GTGGGTAAAGTATTTC-TGGGACATGAGATTGTAAGTCTCGATGGCGCTCTCGATGTCTT 48252 Query 112041 CCCCGTGGATGCCGATTGCGACCCGCATGAACATGT 112076 ||||||||||| | ||||| ||||||| ||||| Sbjct 48251 GACCGTGGATGCCAACAGCGACACGCATGAGCATGT 48216 >seq62 Length=112892 Score = 111 bits (122), Expect = 2e-19 Identities = 258/386 (67%), Gaps = 10/386 (3%) Strand=Plus/Plus Query 182513 GATGAGACCCTTGATGTGAGAACCATCATTATCGGCATCTGTCATAATCATAAGACGACC 182572 |||||||||||||||||| ||||| || | ||| ||| ||||| ||||| | | || Sbjct 20058 GATGAGACCCTTGATGTGCGAACCGTCGTGATCCTGATCGGTCATGATCATGATGCTGCC 20117 Query 182573 ATAGCGAAGTTCAGAAACATCTTGGTAGTCTTTTCCTTGTTGAAGACCAAGGATCTTCTT 182632 || || || || || |||| | || || || |||||||| ||||| | ||| Sbjct 20118 GTAACGCAGGCTGTTGACGTCGAGGTACTGCTTGCCGTGCTGAAGACCCAGGATTTCCTT 20177 Query 182633 GAGATCATTGAACTCCTGGTTTGATGTAAGCTGTGCCACCGAAGCGTCCCGAACATTCTT 182692 || | |||| || |||| | | ||| | ||| || || || || || Sbjct 20178 GATTGCCTTGATTTCGGCGTTTTTCATGATCTGGTCGTGCGATGCCTCGCGGACGTTGAG 20237 Query 182693 ACATTTACCGCGAAGTGGGAACACACCGTAGTGATCACGACCAACGACAGAGAGACCCGC 182752 | ||||||||||| ||||| || ||||||| || | || || | || ||| || Sbjct 20238 AAGCTTACCGCGAAGGGGGAATACTCCGTAGTTGTCCCTTCCGACCTCGACGATACCGGC 20297 Query 182753 AACCGCGAGGGTTTTCGCCGAATCACCCTCCGTGACAATGAGAGTACA--CTTTCCAGAT 182810 ||| || || | ||| ||||| |||||||| |||| |||||| || || | || | Sbjct 20298 AACGGCAAGCGATTTGGCCGAGTCACCCTCGGTGAGAATGAGTGTGCAGTCCTTGGCCTT 20357 Query 182811 TGTGCCGTACCCGCCTTGTTCGCGTCATCCAACTTGGGAATACCGGTAATTTTGG---AC 182867 |||| ||| || ||||| || || || | |||||| || ||| ||| ||| | Sbjct 20358 CCTGCC--ACCGGCGTTGTTGGCATCTTCGAGCTTGGGGATGTTGGTGATTCTGGTTCGC 20415 Query 182868 TTGCGAGCACCATCGGTCTTCTTGAG 182893 ||| | || |||||||||||||| Sbjct 20416 TTGTG---GCCGTCGGTCTTCTTGAG 20438 >seq21 Length=224232 Score = 105 bits (116), Expect = 8e-18 Identities = 237/344 (69%), Gaps = 18/344 (5%) Strand=Plus/Plus Query 122484 GAGACGATCCGACACATACTCAATGTACTCGGACAT---CTTCTCAGAGTTCATACCGAT 122540 |||||| || | ||| ||||||||||||| | |||| ||||| |||||| || || Sbjct 32237 GAGACGGTCAGCCACGTACTCAATGTACTGGCACATGGCCTTCTG---GTTCATGCCAAT 32293 Query 122541 GAG-GTTACATGGGAGTGCGTC---CAAGATGAACCCTTTCTCAATCTCAACCGCCTCTT 122596 ||| | ||| | || | || ||||| || ||||| || || || || ||||| Sbjct 32294 GAGCGCTACGGGCAAGCTC-TCTGTCAAGA--AAGCCTTT-TCGATTTCGACGGCCTCGC 32349 Query 122597 TCACGATGGCGTGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCT-TGAAGAGCTCC 122655 | | ||| | ||| ||| |||| ||||| | | | || |||||||| Sbjct 32350 TGATGATCTTGAGGACAGTGTCGGG-GTGGGCGCGCTTCTTGAGGTGGCTGAAGAGCAAG 32408 Query 122656 ACGGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGA 122715 |||||| || ||| |||||||| || ||||| || || || || |||||| ||| Sbjct 32409 CAGGCAAAGTCGGTGTGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGA 32468 Query 122716 CCTGGCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAA 122774 || ||||||||||| |||||||| | ||| | || | ||| || || || |||||||| Sbjct 32469 CCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGATGCA-AAGGAGCCCGAGAAGAA 32527 Query 122775 GATACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGG 122818 ||| ||||| || || || |||| || || ||||| |||| Sbjct 32528 GATGCCCTCGACGGCGGCGAAAGCAACGAGACGCTCGGCAAAGG 32571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627985431427200