Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq4 219 5e-52 seq21 147 3e-30 seq62 96.9 4e-15 >seq4 Length=437454 Score = 219 bits (242), Expect = 5e-52 Identities = 918/1423 (65%), Gaps = 37/1423 (3%) Strand=Plus/Minus Query 118155 AACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCA 118214 |||||||| ||||| || | | ||||| |||| ||||| ||||| |||||||| Sbjct 49614 AACTCACCGGCGAGCACACGACGCGAGTAGATGTTGGAGGTGTAAGGCTCGAAGCACTCG 49555 Query 118215 TTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTA 118274 ||| ||||||||| || || ||||| || ||||| || || | | || ||| Sbjct 49554 TTGAAACCCAAGATCTGACTGGTCGAGGCAGTAGGCATAGGAGCGAGCAAGAGCGAGTTG 49495 Query 118275 CGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAGTTGAGCTTTGTC 118334 || ||||| | | || ||||||| | ||||||| || | | | | Sbjct 49494 CGAAGACCGTGCTTGGCGATCTTAGCCTTGAGCTCTGCCCAGTCCCAGAGGTCCGAAGGC 49435 Query 118335 TCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTC 118394 | |||||| || |||| || ||| || || || ||||| || | | ||| Sbjct 49434 GTGACGCCCCACATGTCGTACTGCAGCTCACCCTGCGAGGCAGGCGAGCCAGCGTAGGTC 49375 Query 118395 TCATATGGGCCCTCAACCTCCGCCAATTCGGA-GCTCGCCTCGAGGGCTGCGTGATACAT 118453 || || | ||| | ||| |||| ||| | | ||| |||||||| ||||| || || Sbjct 49374 TCGTAGGTGCCGTGCTCCTGAGCCAGCTCGCACGATCGT-TCGAGGGCAGCGTGGTAGAT 49316 Query 118454 TGTTTCAAAAATGCGAGCATTCATTGCCTTG-GCCTCGTCGGAATCAAACGCG-AGTCGG 118511 || ||||| || | | || | || | |||||| || ||||| ||| || | Sbjct 49315 GGTCTCAAAGATCTGTACGTTGAG-GCGACGAGCCTCGGGCGACTCAAAGGCGTAGCC-- 49259 Query 118512 CACAAA-ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCAT 118570 || | || || | || ||||||||||||||||||| ||||| ||||| || | ||| Sbjct 49258 CATGATCATGAAGGCGTCGGCGAGACCTTGGACACCGATACCAATGGGGCGGTGGCGCAT 49199 Query 118571 ATTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATT 118630 || || | || || ||| || ||||| | || | || || | | | || ||||| Sbjct 49198 GTTGGATCTGCGGGCCTCCTCGACAGGATAGTAGTTGATGTCAATGATCTTGTTGAGATT 49139 Query 118631 TTTGGTGACAACCTTTGTGA---TTTCATGAAGCTTT---TCGTAATCAAAACTGCGAGT 118684 ||| || |||| | || | | | || |||| ||||| | |||| Sbjct 49138 CTTGCAGATGGCCTTGGCGACGCTGTGAAGACGCTTGAAGTCGTA--CGTTTTGGCGA-- 49083 Query 118685 CTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATC 118744 | | || | | | || ||||||||||| ||||| || || || | ||| || Sbjct 49082 --CAGGGTCGATAAAGGTGGGCAGGGCGATTGAGGCCAGGTTGCAGACGGCAACCTCGTC 49025 Query 118745 CTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTT 118804 | ||||||| || || || ||||||||||| || | ||| |||||||| | ||| Sbjct 49024 GGGGGCGCTGTACTCGATGATCTCGGTGCACAAGTTGGAGCACTTGATGGTGCCGAGGTT 48965 Query 118805 CTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTC 118864 ||| || || ||| ||| || |||||||| || ||| | || | || ||||| Sbjct 48964 CTTCTGGTTGCTCTTGCGGTTGGCAGCGTCCTTGTAGAGGATGAAGGGGTTGCCGGTCTC 48905 Query 118865 CGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTC 118923 || ||| ||| ||| || || | ||||| | || || || | || || |||| | Sbjct 48904 GGTCTGGCACTCGAGGATGGCGTACCAGAGCTTCTGCGCCTTG-ACGGTTCGCTTGGAGC 48846 Query 118924 GCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGA 118983 | ||||| ||||||| ||||||| |||||||| || || | || | || Sbjct 48845 GACCCTCGGCCTCGTAGCGCTCGTAGAGGCGCTCAAACTCGTCGCCGTAGCAGTCGGCGA 48786 Query 118984 GCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCA 119043 | ||||| || | ||||| | ||| ||||| | || || ||| |||| ||||| Sbjct 48785 GACCTGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTCGACCCTCTTCA 48726 Query 119044 TGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCC 119103 ||||||| || |||| |||||| || ||||||| || || || ||||| | | Sbjct 48725 TGAAGAGATCGGGGACCCAGAGGGCGTAGAAGAGCTCACGGGCACGCATCTCTTCCTTGC 48666 Query 119104 CCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACA 119163 | || || || | || | || || | || ||||| |||||| || || | ||| | Sbjct 48665 CGTGGTTTTTGCGGAGATCGAGGAACTCAAAGACATCCGAGTGCCATGGCTCAATGTAGA 48606 Query 119164 CCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAA 119220 || | | ||| ||| ||| |||||| || || | |||||| ||||| Sbjct 48605 TGGCAAAGGCACCCGGACGCTTGTTGCCACCCTGGTCGACGTAGCGGGCAGTGTTGTTAA 48546 Query 119221 ATACACGAAGCATTGGAATGATACCAT--CGGATTGGCCATTTGT-CCCCCGA-ATACGA 119276 | || || ||||| || | |||||| | | || || || || || ||| ||||| Sbjct 48545 AGACGCGGAGCATGGGTACGATACCGTTACTGA--CACCGTTGGTGCCGGCGATGTACGA 48488 Query 119277 GAC-TTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGAT 119335 | | || | || || |||||||| | ||| ||||| || || ||| ||||| Sbjct 48487 GCCGGTACCGCGAATG-CA--GTGGATGTTGAGACCGATACCACCGGCGGTCTTGGAGAT 48431 Query 119336 TTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGAT 119395 || ||| | |||| || ||||||| || ||||||||||| |||| | | || Sbjct 48430 CATGGCACACGTCTTGAGCGTGTCGTAGATGCCGTCGATCGAGTCGTCCTTCATGGTGAC 48371 Query 119396 GAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGC 119455 |||||||| ||| | || || |||||||||||||||||||| || || | || Sbjct 48370 CAGGAAGCACGACGAGAGCTGTGGGTGTGGTGTACCAGCGTTGAAGAGGGTGGGCGAGGC 48311 Query 119456 GTGGATGAA-CATACCTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTT 119514 |||| | || || | |||||||| | ||| ||||| | | || ||||||| Sbjct 48310 GTGGGTAAAGTATTTC-TGGGACATGAGATTGTAAGTCTCGATGGCGCTCTCGATGTCTT 48252 Query 119515 CCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGG 119557 ||||| || || | | ||| ||||| | ||||| ||| || Sbjct 48251 GACCGTGGATGCCAACAGCGACACGCATGAGCATGTGTTGAGG 48209 >seq21 Length=224232 Score = 147 bits (162), Expect = 3e-30 Identities = 129/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || ||| ||||||||||||||||||||||| || || |||||| ||||| Sbjct 32411 GGCAAAGTCGGTGTGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGACC 32470 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 ||||||||||| |||||||| | |||||| || | ||| ||||| ||||||||||| Sbjct 32471 GGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGATGCAAAGGAGCCCGAGAAGAAGAT 32530 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGG 130175 ||||| || ||||| |||| ||||||||| ||||||| Sbjct 32531 GCCCTCGACGGCGGCGAAAGCAACGAGACGCTCGGCAAAGG 32571 >seq62 Length=112892 Score = 96.9 bits (106), Expect = 4e-15 Identities = 217/326 (67%), Gaps = 0/326 (0%) Strand=Plus/Plus Query 179734 TTGAGGAGCGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTGTGAA 179793 ||||| | ||| || | |||| || || | |||| |||||||||||| ||||| ||| Sbjct 20020 TTGAGCAACGAGGGGTAAAAGTGGTCGAGGAAGTTGATGATGAGACCCTTGATGTGCGAA 20079 Query 179794 CCATCGTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCGAAGCTCGGAAACATCT 179853 || |||| |||| ||| ||||| ||||| | | || || || || | || || Sbjct 20080 CCGTCGTGATCCTGATCGGTCATGATCATGATGCTGCCGTAACGCAGGCTGTTGACGTCG 20139 Query 179854 TGATAATCCTTACCTTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTCTTGGTTT 179913 | || | ||| || || |||||||||| ||| | ||||| | |||| || |||| Sbjct 20140 AGGTACTGCTTGCCGTGCTGAAGACCCAGGATTTCCTTGATTGCCTTGATTTCGGCGTTT 20199 Query 179914 GATGTGAGTTGCGCCACTGAAGCATCTCGGACATTTTTACACTTCCCACGGAGAGGGAAC 179973 ||| || | || || || ||||| || | ||| || || || ||||| Sbjct 20200 TTCATGATCTGGTCGTGCGATGCCTCGCGGACGTTGAGAAGCTTACCGCGAAGGGGGAAT 20259 Query 179974 ACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAA 180033 || ||||||| || | || ||| | || ||| ||||| || || | || || || Sbjct 20260 ACTCCGTAGTTGTCCCTTCCGACCTCGACGATACCGGCAACGGCAAGCGATTTGGCCGAG 20319 Query 180034 TCACCCTCCGTCACGATGAGCGTACA 180059 |||||||| || | ||||| || || Sbjct 20320 TCACCCTCGGTGAGAATGAGTGTGCA 20345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618389343029920