Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq4 253 2e-62 seq21 131 2e-25 seq62 123 3e-23 >seq4 Length=437454 Score = 253 bits (280), Expect = 2e-62 Identities = 902/1388 (65%), Gaps = 35/1388 (3%) Strand=Plus/Plus Query 104229 ACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTCTTGGAGA 104288 ||||| ||||||| || || | || || || || ||||||| || | | | |||| Sbjct 48216 ACATGCTCATGCGTGTCGCTGTTGGCATCCACGGTCAAGACATCGAGAGCGCCATCGAGA 48275 Query 104289 CATACGACAAGATGTCCCAAGGTATG-TTCATTCACGCAACACCAACCCTCTTCAATGCT 104347 | ||| | |||||||| | || || | ||||| | || ||||||||||| ||| Sbjct 48276 CTTACAATCTCATGTCCCA-GAAATACTTTACCCACGCCTCGCCCACCCTCTTCAACGCT 48334 Query 104348 GGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATC 104407 ||||||||| || || | || |||||||| || ||| ||||| ||||| ||| Sbjct 48335 GGTACACCACACCCACAGCTCTCGTCGTGCTTCCTGGTCACCATGAAGGACGACTCGATC 48394 Query 104408 AACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATT 104467 |||| ||||| | || || | | |||||| ||||| ||| || || ||||| Sbjct 48395 GACGGCATCTACGACACGCTCAAGACGTGTGCCATGATCTCCAAGACCGCCGGTGGTATC 48454 Query 104468 GGGATGCACATCCA-TG-ATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-ACAAATGG 104523 || | ||||||| || || | | | |||||| ||| || || || || Sbjct 48455 GGTCTCAACATCCACTGCATTCGCGGTACCGG----CTCGTACATCGCCGGCACCAACGG 48510 Query 104524 TCAATCAG--ATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 104581 | |||| | ||||| | || ||||| ||||| |||||| ||| || ||||| || Sbjct 48511 TG--TCAGTAACGGTATCGTACCCATGCTCCGCGTCTTTAACAACACTGCCCGCTACGTC 48568 Query 104582 AATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 104635 | || | ||| ||||| ||| | | || |||| |||||||||||||| Sbjct 48569 GACCAGGGTGGCAACAAGCGTCC---GGGTGCCTTTGCCATCTACATTGAGCCATGGCAC 48625 Query 104636 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGC 104695 ||||| || | |||||||| || | || ||||| || | || ||| ||| | Sbjct 48626 TCGGATGTCTTTGAGTTCCTCGATCTCCGCAAAAACCACGGCAAGGAAGAGATGCGTGCC 48685 Query 104696 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 104755 || || ||||||| ||| |||||| | || ||||||||||||||||| || ||| ||| Sbjct 48686 CGTGAGCTCTTCTACGCCCTCTGGGTCCCCGATCTCTTCATGAAGAGGGTCGAGCAGAAC 48745 Query 104756 GGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAG 104815 ||| | ||||| ||| | || || || || || |||||| |||| | || || Sbjct 48746 GGCGACTGGTCGCTCATGTGCCCCAACGAGTGCCCAGGTCTCGCCGACTGCTACGGCGAC 48805 Query 104816 GAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCG-ACGGTGCC 104874 |||||||| ||| ||| ||||||| || ||||| | | ||| || || | Sbjct 48806 GAGTTTGAGCGCCTCTACGAGCGCTACGAGGCCGAGGGTCGCTCCA-AGCGAACCGT-CA 48863 Query 104875 AGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACA 104933 || || || | | ||| | || || ||| ||| || |||||||| || | || | || Sbjct 48864 AGGCGCAGAAGCTCTGGTACGCCATCCTCGAGTGCCAGACCGAGACCGGCAACCCCTTCA 48923 Query 104934 TGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGA 104993 | || ||||| ||||| |||| ||||| || || ||||| | || |||||| Sbjct 48924 TCCTCTACAAGGACGCTGCCAACCGCAAGAGCAACCAGAAGAACCTCGGCACCATCAAGT 48983 Query 104994 GTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTA 105053 | ||||| | || || || ||| | || | | | | || ||| || || || | Sbjct 48984 GCTCCAACTTGTGCACCGAGATCATCGAGTACAGCGCCCCCGACGAGGTTGCCGTCTGCA 49043 Query 105054 ACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATG 105113 |||| || |||||||| || |||| | | | || || | | || || | || | Sbjct 49044 ACCTGGCCTCAATCGCCCTGCCCACCTTTATCGACCCTGTCGCCAAAACGTACGACTTCA 49103 Query 105114 AAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAA 105173 | || ||| || | || | || ||| || || |||| | ||||| | | Sbjct 49104 AGCGTCTTCACAGCGTCGCCAAGGCCATCTGCAAGAATCTCAACAAGATCATTGACATCA 49163 Query 105174 ATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCG 105233 | | || || || ||| || || | ||| || ||| | ||||| || |||||| ||| Sbjct 49164 ACTACTATCCTGTCGAGGAGGCCCGCAGATCCAACATGCGCCACCGCCCCATTGGTATCG 49223 Query 105234 GTGTTCAGGGTCTCGCGGATGTATTCAT--TCTTTGTCGCCACGCATTTGATTCCGACGA 105291 |||| || |||||||| || | ||||| || | | || |||| ||||| || ||| Sbjct 49224 GTGTCCAAGGTCTCGCCGACGCCTTCATGATCATGG--GCTACGCCTTTGAGTCGCCCGA 49281 Query 105292 AGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGA- 105350 || |||| | | || ||||||||||| || ||||| || || || ||| Sbjct 49282 GGCTCGTCGCCTCAACGTACAGATCTTTGAGACCATCTACCACGCTGCCCTCGA-ACGAT 49340 Query 105351 -GTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCA 105409 || | ||| |||| ||| | || | || || |||| | || || || || || Sbjct 49341 CGTGC-GAGCTGGCTCAGGAGCACGGCACCTACGAGACCTACGCTGGCTCGCCTGCCTCG 49399 Query 105410 CAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGACTGGGAA 105469 || || | ||| || | || ||||||| | | | | | || ||||||| | Sbjct 49400 CAGGGTGAGCTGCAGTACGACATGTGGGGCGTCACGCCTTCGGACCTCTGGGACTGGGCA 49459 Query 105470 GCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATG 105529 | ||||||| ||| || | |||||||| ||| ||| | | ||||| ||| Sbjct 49460 GAGCTCAAGGCTAAGATCGCCAAGCACGGTCTTCGCAACTCGCTCTTGCTCGCTCCTATG 49519 Query 105530 CCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACG 105589 || || ||||| ||| || ||||||||| || || ||||| || || ||||| | Sbjct 49520 CCTACTGCCTCGACCAGTCAGATCTTGGGTTTCAACGAGTGCTTCGAGCCTTACACCTCC 49579 Query 105590 AACATCTA 105597 |||||||| Sbjct 49580 AACATCTA 49587 >seq21 Length=224232 Score = 131 bits (144), Expect = 2e-25 Identities = 127/161 (79%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 94796 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 94855 ||||||| ||||| ||| | || || || || ||||| ||||||||||| || |||| Sbjct 32571 CCTTTGCCGAGCGTCTCGTTGCTTTCGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCCT 32512 Query 94856 TCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 | ||| | || | |||||||||||||| ||||||||||| ||||| |||||||||| Sbjct 32511 T-TGCATCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTTACCTTCTCCAAC 32453 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||| ||||| ||||||||||| || ||| || ||||| Sbjct 32452 GAGCTCATCTCCCGTGACGAGGGTCTTCACACCGACTTTGC 32412 >seq62 Length=112892 Score = 123 bits (136), Expect = 3e-23 Identities = 203/293 (69%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 169160 TTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGA 169219 |||| ||||||||||||||||| |||||||||| ||| ||| ||||||||||||| Sbjct 20053 TTGATGATGAGACCCTTGATGTGCGAACCGTCGTGATCCTGATCGGTCATGATCATGATG 20112 Query 169220 CGACCATACCGAAGCTCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATC 169279 | || || || || | || || | || | ||| || || |||||||||| ||| Sbjct 20113 CTGCCGTAACGCAGGCTGTTGACGTCGAGGTACTGCTTGCCGTGCTGAAGACCCAGGATT 20172 Query 169280 TTCTTGAGATCGTTGAACTCTTGGTTTGATGTGAGCTGTGTGACAGAGGCATCGCGAACA 169339 | ||||| | |||| || |||| ||| ||| | || || ||||| || Sbjct 20173 TCCTTGATTGCCTTGATTTCGGCGTTTTTCATGATCTGGTCGTGCGATGCCTCGCGGACG 20232 Query 169340 TTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCACGACCAACGACGGAGAGA 169399 || | ||| || ||||| ||||| || ||||||| || | || || || || | Sbjct 20233 TTGAGAAGCTTACCGCGAAGGGGGAATACTCCGTAGTTGTCCCTTCCGACCTCGACGATA 20292 Query 169400 CCCGCGACTGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGCGTACA 169452 || || || || || | || ||||||||||||||||||| ||||| || || Sbjct 20293 CCGGCAACGGCAAGCGATTTGGCCGAGTCACCCTCGGTGAGAATGAGTGTGCA 20345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583217551211680