Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq3 203 1e-46 seq67 138 3e-27 seq10 138 3e-27 seq18 107 6e-18 >seq3 Length=439134 Score = 203 bits (224), Expect = 1e-46 Identities = 466/701 (66%), Gaps = 3/701 (0%) Strand=Plus/Plus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 || || || |||||| | ||||||||||| || ||||| ||||| ||||||||||| ||| Sbjct 209747 GCCATCGGTATCGATCTTGGTACTACTTACTCGTGTGTCGCTGTCTGGCAAAATGACCGT 209806 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || || | ||||| || || || |||||| | || || || ||||| || || || || Sbjct 209807 GTCGAGGTCATTGCCAACGACCAGGGTAACCGTACCACCCCCTCATATGTCGCCTTCACT 209866 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || | |||||| | || || ||| | || || || || | |||| || || | || Sbjct 209867 GATTCGGAGCGTCTCATCGGAGATGCCGCCAAGAACCAGGTTGCTATGAACCCTCACAAC 209926 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCT 349438 || || || ||||| ||||| || ||||| | | || |||| || || Sbjct 209927 ACCGTCTTCGATGCCAAGCGTCTCATTGGCCGCAAGTTCGATGACGCCGAGGTTCAGTCC 209986 Query 349439 GATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAG 349498 || | || || | || || | || | | ||||| || || ||| Sbjct 209987 GACATGAAGCACTGGCCCTT---CGAGGTCACCTCTGTCGGTGGCAAGCCTCAGATTCGC 210043 Query 349499 GTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTA 349558 | || || || ||||| | || || |||||||| || || || |||||| | Sbjct 210044 ATCGAGTACAAGGGTGAGAAGAAGACCTTCACTCCCGAAGAGATCTCGTCCATGGTTCTC 210103 Query 349559 GTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATT 349618 | || ||| || | ||||| || || | |||| || || | ||||| || | Sbjct 210104 CTCAAGATGCGCGAGACCGCTGAGGCTTACCTCGGTGGCACCGTCAAGGATGCCGTCGTC 210163 Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678 ||||| || || || || || || | |||||| || || || ||||| || | |||| Sbjct 210164 ACTGTCCCCGCTTACTTCAACGACTCGCAGCGTCAAGCCACCAAGGATGCCGGTATCATT 210223 Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738 | || | || || | |||| || || || ||||| ||||| || || || || || Sbjct 210224 TCCGGTCTCAACGTCATGCGAATCATCAACGAGCCCACCGCTGCCGCTATCGCTTACGGT 210283 Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798 || || || | || ||| || || || | || || || ||| | ||||| |||||| Sbjct 210284 CTCGACAAGAAGACTGAGGGTGAGAAGAACGTCCTCATCTTCGATCTCGGTGGAGGTACT 210343 Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858 || ||||| || || || || | || ||||| || |||||||| || || || || ||| Sbjct 210344 TTCGATGTCTCGCTCCTGACCATCGAGGAGGGTATCTTTGAAGTCAAGGCCACCGCAGGT 210403 Query 349859 GATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGT 349899 || || || |||||||| || || ||||| || |||||||| Sbjct 210404 GACACCCACCTTGGTGGTGAGGACTTTGACAACCGTCTCGT 210444 >seq67 Length=99859 Score = 138 bits (152), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | || | ||||| ||||| || || || || ||||| || || || Sbjct 38088 CATACCACCGCGGAGTCGCAAGACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTC 38147 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || || || || || |||||||| ||||| ||||||||||| Sbjct 38148 CGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCTGCAAAGATGAGACGCTGCTGATCAGG 38207 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || ||||| || || || || || || || |||| || || | ||| Sbjct 38208 AGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAAGATTC 38267 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || |||| ||||| || || | || || ||||| |||||||| Sbjct 38268 GACCTCGAGGGTAATGGTCTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 38318 Score = 123 bits (136), Expect = 8e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | ||| || || || || || || || || || || Sbjct 38316 CATACCACCACGGAGACGGAGGACCAAATGGAGGGTCGATTCCTTCTGGATGTTGTAGTC 38375 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || || || |||||||| ||||| || ||||||||||| || Sbjct 38376 CGAGAGGGTACGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATGAGGCGTTGCTGATCGGG 38435 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || ||||| || || || || || || || |||| || || | || Sbjct 38436 AGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGAAGACTC 38495 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| || || || || || ||||| |||||||| Sbjct 38496 TACCTCGAGGGTGATGGTCTTACCAGTCAGAGTCTTGACAAAGATCTGCAT 38546 Score = 116 bits (128), Expect = 1e-20 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 140546 CTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAA 140605 ||| || ||||| || ||||| || | || || |||||||| | || || |||||||| Sbjct 37671 CTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGACCATCTTCCAACTGCTTACCAGCAAA 37730 Query 140606 GATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATT 140665 ||| ||||| ||||| ||||| || || || || || ||||| || || || || || || Sbjct 37731 GATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 37790 Query 140666 ATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 ||||||| || || | || ||||| | ||| | || || || || || || || || Sbjct 37791 GTCAATCGTGTCCGAAGACTCGACTTCCAATGTGATGGTTTTGCCAGTGAGCGTCTTGAC 37850 Query 140726 AAAAATCTGCAT 140737 ||| |||||||| Sbjct 37851 AAAGATCTGCAT 37862 >seq10 Length=322828 Score = 138 bits (152), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || || || ||||| || || || || ||||| Sbjct 156564 CATACCACCACGCAGACGGAGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAATC 156623 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || || || ||||| || || || || |||||||| || || ||||||||||| Sbjct 156624 AGAGAGCGTGCGGCCGTCTTCGAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGATCAGG 156683 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || |||||||| || || || || || || ||||| | || || | || Sbjct 156684 TGGAATACCCTCCTTATCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGGACTC 156743 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| || || || || || ||||| |||||||| Sbjct 156744 GACCTCGAGGGTGATGGTCTTGCCCGTGAGAGTCTTGACAAAGATCTGCAT 156794 Score = 136 bits (150), Expect = 1e-26 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||| ||||| | | || || || || || || ||||| || ||||| || || || || Sbjct 156339 ACCTCCACGGAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGA 156398 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 || || || ||||| || || || |||||||||||||| || || ||||| ||||| || Sbjct 156399 CAAAGTGCGGCCATCCTCGAGCTGCTTTCCAGCAAAGATGAGTCGCTGCTGGTCAGGTGG 156458 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||| ||||| || |||||||| || || || || || || || | || || | ||| || Sbjct 156459 AATGCCTTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGACGATTCGAC 156518 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | ||||| ||||| | || || ||||| |||||||| Sbjct 156519 CTCGAGAGTGATCGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 156566 >seq18 Length=237310 Score = 107 bits (118), Expect = 6e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567 ||||||||||| | | || ||||| || || || ||||| || || || || || || Sbjct 132623 ATACCACCACGCAGACGGAGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCC 132564 Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627 || | || || || || || || || ||||| |||||||| || || ||||| || || Sbjct 132563 GAGAGCGTGCGGCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAGGCGCTGCTGGTCGGGG 132504 Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA 140687 || || || || || |||||||| || || || ||||| || || | || || | || Sbjct 132503 GGGATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCC 132444 Query 140688 ACTTCAAGTGTAACTGTCTTTCCGGTT 140714 || ||||| |||| ||||| || ||| Sbjct 132443 ACCTCAAGGGTAATGGTCTTACCTGTT 132417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515139234983396