Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq4 381 6e-101 seq62 107 2e-18 seq21 102 9e-17 >seq4 Length=437454 Score = 381 bits (422), Expect = 6e-101 Identities = 547/763 (72%), Gaps = 6/763 (1%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| ||||| | || ||||||||| | ||| | | | | | ||||| ||| Sbjct 48222 TCATGCGTGTCGCTGTTGGCATCCACGGTCAAGACATCGAGAGCGCCATCGAGACTTACA 48281 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 | | ||| ||| || |||||||| |||||| |||| ||||| |||||||||||||| Sbjct 48282 ATCTCATGTCCCAGAAATACTTTACCCACGCCTCGCCCACCCTCTTCAACGCTGGTACAC 48341 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 ||||| ||| | ||| ||||||||||| | |||||||| |||||||||||||||| Sbjct 48342 CACACCCACAGCTCTCGTCGTGCTTCCTGGTCACCATGAAGGACGACTCGATCGACGGCA 48401 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 ||||||| ||||||||| ||||||| ||||||||| | |||||||||||| || Sbjct 48402 TCTACGACACGCTCAAGACGTGTGCCATGATCTCCAAGACCGCCGGTGGTATCGGTCTCA 48461 Query 53433 ACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492 || | | | || | | |||| | ||| || || ||||| ||| | | Sbjct 48462 ACATCCACTGCATTCGCGGTACCGGCTCGTACATCGCCGGCACCAACGGTGTCAGTAACG 48521 Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552 | ||||| || |||||||||||||| |||||||| ||||| |||||| |||||||||| Sbjct 48522 GTATCGTACCCATGCTCCGCGTCTTTAACAACACTGCCCGCTACGTCGACCAGGGTGGCA 48581 Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612 ||||| ||| | || ||||||||| | ||||| |||||| | || | | |||| Sbjct 48582 ACAAGCGTCCGGGTGCCTTTGCCATCTACATTGAGCCATGGCACTCGGATGTCTTTGAGT 48641 Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACA 53671 | ||||| || || || || || | ||||||||||| |||||| || || ||| Sbjct 48642 TCCTCGATCTCCGCAAAAACCACGGCAAGGAAGAGATGCGTGCCCGTGAGCTCTTCTAC- 48700 Query 53672 GCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTG 53731 || || ||| | || || ||||||||| | | ||| ||| || ||| || |||| || Sbjct 48701 GCCCTCTGGGTCCCCGATCTCTTCATGAAGAGGGTCGAGCAGAACGGCGACTGGTCGCTC 48760 Query 53732 ATGTGCCCGAACGAGTGCCCCGGCCTC-CAGGGTGTCTACGGTGAGGAGTTTAACGAGAT 53790 |||||||| ||||||||||| || ||| | | || |||||| || |||||| | | Sbjct 48761 ATGTGCCCCAACGAGTGCCCAGGTCTCGCCGACTG-CTACGGCGACGAGTTTGAGCGCCT 48819 Query 53791 GTATCGGACG-TACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTAT 53849 || || || |||| | |||| |||| |||| | |||||||||| || | | Sbjct 48820 CTA-CGAGCGCTACGAGGCCGAGGGTCGCTCCAAGCGAACCGTCAAGGCGCAGAAGCTCT 48878 Query 53850 GGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATT 53909 || | || |||||| || ||||| ||||| || | || | ||| ||||||||| Sbjct 48879 GGTACGCCATCCTCGAGTGCCAGACCGAGACCGGCAACCCCTTCATCCTCTACAAGGACG 48938 Query 53910 CGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAA 53952 | | |||| |||||||||||||||||| ||||| |||||| Sbjct 48939 CTGCCAACCGCAAGAGCAACCAGAAGAACCTCGGCACCATCAA 48981 Score = 122 bits (134), Expect = 1e-22 Identities = 522/810 (64%), Gaps = 34/810 (4%) Strand=Plus/Plus Query 55138 GAACCTGAACCGGGTCATCGACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAA 55197 ||| || ||| | |||| |||| || ||||| || || | ||| |||| ||||| Sbjct 49138 GAATCTCAACAAGATCATTGACATCAACTACTATCCTGTCGAGGAGGCCCGCAGATCCAA 49197 Query 55198 CCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCT 55257 | | || ||||| ||||| | |||||||| || || | |||||| ||||||||| | Sbjct 49198 CATGCGCCACCGCCCCATTGGTATCGGTGTCCAAGGTCTCGCCGACGCCTTCATGATCAT 49257 Query 55258 CGGATTGCCCTTCGACTCGGAACCTGCTCGAGAAATTAACCAGGACATCTTC-AGTCGCA 55316 || | |||| || ||| ||||| | ||| | ||||| || | || Sbjct 49258 GGGCTACGCCTTTGAGTCGCCCGAGGCTCGTCGCCTCAACGTACAGATCTTTGAGAC-CA 49316 Query 55317 TCTACTTTGCAGCGCTCGAGGAGTCGTGTCATCTGGCT-ATGAGCGAGGGGACCTACGAG 55375 ||||| || || ||||| ||||| | |||||| | |||| | || ||||||||| Sbjct 49317 TCTACCACGCTGCCCTCGAACGATCGTGCGAGCTGGCTCAGGAGC-ACGGCACCTACGAG 49375 Query 55376 ACGTTCCGTGATTCGCCAGCTGACAAGGGACTTCTCCAGTTCGATCTATGGGGC---AAG 55432 || | | || ||||| || |||| || |||| ||| | |||||| | | Sbjct 49376 ACCTACGCTGGCTCGCCTGCCTCGCAGGGTGAGCTGCAGTACGACATGTGGGGCGTCACG 49435 Query 55433 TCT---GACCCCATGT--TTGACA-AGTTGAAGCATGACATTCACTTGTGGGGCCTACGC 55486 || |||| | | | | || || | ||| | | || | | || || ||| Sbjct 49436 CCTTCGGACCTCTGGGACTGGGCAGAGCTCAAGGCTAAGATCGCCAAGCACGGTCTTCGC 49495 Query 55487 AACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAAC 55546 ||||| || | | || || ||||| || || ||||| ||||||| |||| |||| Sbjct 49496 AACTCGCTCTTGCTCGCTCCTATGCCTACTGCCTCGACCAGTCAGATCTTGGGTTTCAAC 49555 Query 55547 GAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTT 55606 ||| |||||||| ||||| ||||||||||| ||| || || || |||||||| Sbjct 49556 GAGTGCTTCGAGCCTTACACCTCCAACATCTACTCGCGTCGTGTGCTCGCCGGTGAGTTC 49615 Query 55607 GTCATGATCAACAA---GCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCG 55663 || ||||| | ||| | || | | || || | ||||||| Sbjct 49616 CAGGTGGTCAACCCTTGGTTGCTCCGCGAGCTCGTCGAGCAGGGCTT---GTGGAACGAC 49672 Query 55664 CAGATCAAGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAATCTG---GAGATT 55717 ||| |||| || || || | | |||| || ||| ||||||| || | || Sbjct 49673 ACGATGAAGAACCGCATCATCGCCC---ACGGCGGTTCCATCCAGAACGTGCCCGGCATC 49729 Query 55718 CCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATT 55777 || || ||||| || | ||| ||| || |||||||| |||||| | || Sbjct 49730 CCCGACCGCATCAAGAAGCTCTACAAGACCGTCTGGGAGATCAGCCAGAAGGCCATCATC 49789 Query 55778 GACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCT---TC 55834 |||||| || || || ||||| | |||| |||||| ||||| || |||||| || Sbjct 49790 GACATGGCCGCCGACCGCGGTGCCTTCATCTGCCAGTCGCAGTCGCTCAACATCCATCTC 49849 Query 55835 ATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGA 55894 || | || | | | | || | | |||||||||||| ||||| ||||||||||| Sbjct 49850 TCGGCG---CCCACGTTCGGCCAGCTCACCTCGATGCACTTCTACGGCTGGAAGAAGGGT 49906 Query 55895 CTCAAGACGGGTATGTACTATCTGCGGACC 55924 |||||||| |||| ||||| ||||| ||| Sbjct 49907 CTCAAGACCGGTACCTACTACCTGCGCACC 49936 >seq62 Length=112892 Score = 107 bits (118), Expect = 2e-18 Identities = 261/393 (66%), Gaps = 12/393 (3%) Strand=Plus/Plus Query 152769 GTTGAGGACCAAGCCCTTGATGTGCGATCCGTCAAGATCCGCGTCGGTCATGATCATCAG 152828 ||||| || | |||||||||||||| ||||| ||||| |||||||||||||| | Sbjct 20052 GTTGATGATGAGACCCTTGATGTGCGAACCGTCGTGATCCTGATCGGTCATGATCATGAT 20111 Query 152829 ACGACCGTAGCGCAGG----TCACGTAGTGACCCGTAGACCTTTCCATGTTGAAGCCCGA 152884 | ||||| |||||| | |||| | | ||| ||| || || ||||| || | Sbjct 20112 GCTGCCGTAACGCAGGCTGTTGACGTCGAG----GTACTGCTTGCCGTGCTGAAGACCCA 20167 Query 152885 GGATCTTTTTGAGGTTGGAA--AATTCCTCATTATCGGTCACCTGTTTCACCGTGGCATC 152942 |||| | |||| ||| | ||| | || | | | ||| | || || || Sbjct 20168 GGATTTCCTTGA--TTGCCTTGATTTCGGCGTTTTTCATGATCTGGTCGTGCGATGCCTC 20225 Query 152943 CCGAACATTGCGCGGCTTTCCCCGGAGTGGAAACACGCCGAACGCGTTGCGGCCTACAAC 153002 || || ||| | |||| || || || || || || ||| | || | || || | Sbjct 20226 GCGGACGTTGAGAAGCTTACCGCGAAGGGGGAATACTCCGTAGTTGTCCCTTCCGACCTC 20285 Query 153003 GCTCAGACCGGCAATAGCAAGGGCTTTCGCCGAGTCACCCTCGGTGATAATAAGCGTACA 153062 | | |||||||| ||||| | ||| ||||||||||||||||||| ||| || || || Sbjct 20286 GACGATACCGGCAACGGCAAGCGATTTGGCCGAGTCACCCTCGGTGAGAATGAGTGTGCA 20345 Query 153063 GTCGTGAGACCGATGAGTACCGGCCCAGTTGGCGTCGTCAAGCTTGGGGATTCCCGTGAT 153122 ||| | | | |||||| |||||| || || ||||||||||| ||||| Sbjct 20346 GTCCTTGGCCTTCCTGCCACCGGCGTTGTTGGCATCTTCGAGCTTGGGGATGTTGGTGAT 20405 Query 153123 CCTGCTTTTCTTAGAGCCGTCGGTTTTCTTCAG 153155 ||| || ||| ||||||||| ||||| || Sbjct 20406 TCTGGTTCGCTTGTGGCCGTCGGTCTTCTTGAG 20438 Score = 86.0 bits (94), Expect = 7e-12 Identities = 84/106 (79%), Gaps = 2/106 (2%) Strand=Plus/Plus Query 119083 GTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTG-CTCCTCGTCGT 119141 |||||| |||||||||||||| ||||| || |||||||| || | || ||| | ||| | Sbjct 21252 GTTGGCGAGCTTGGCACCGTAACCGTTACGGCCACCGGTGAC-CTTTGCCTCGTTGTCAT 21310 Query 119142 TGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGGGAT 119187 ||||||||| ||| | || || ||||||||||||||||| || Sbjct 21311 CGTAGTTGGACGAGGTGAGGAGATGTCCAAAGATGAGCTCGGGAAT 21356 >seq21 Length=224232 Score = 102 bits (112), Expect = 9e-17 Identities = 316/485 (65%), Gaps = 12/485 (2%) Strand=Plus/Plus Query 74790 TCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAG 74849 || || || || | ||| || ||||| || ||||||||||| | ||| ||||||| Sbjct 32451 TCGTTGGAGAAGGTAAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGATGCA 32510 Query 74850 AAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAAC 74909 ||||| || |||||||||||| ||||| || || || || || || | || || Sbjct 32511 AAGGAGCCCGAGAAGAAGATGCCCTCGACGGCGGCGAAAGCAACGAGACGCTCGGCAAA- 32569 Query 74910 GGTGCATCGGAAGTC----ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGG 74965 |||| || ||| ||||| ||||||| || || || | ||||| | || Sbjct 32570 GGTGGCGCGCCTGTCGCTGATCCATCGAAGAGCCCAGTCGGCCTTCTGCTTGACGACGGG 32629 Query 74966 GACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTC 75025 || || |||| || | |||||| | | || ||||| || | | | ||| Sbjct 32630 GATGGTCTCGACGGCGTCAAAGAGGAATTCACGCTGCTCGGGTTCGCGAATGTACGAGTC 32689 Query 75026 AATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAA 75085 || | || ||||| ||||| || || || ||| | | |||| | ||||||| Sbjct 32690 GATGAGGAGCGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAA 32749 Query 75086 AGACCGCGCCTCTGCAATCTGTACATCCTT--TGAAAAATTCATGTCGATATTCTCCATG 75143 | || ||||| ||| ||| || || ||||| || | | | ||||| || Sbjct 32750 GCAGCGGGCCTCGGCAGCCTGAACTTCGGAGCTGAAACGCTC--GACTAGGTTCTCGTTG 32807 Query 75144 ACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCG 75203 ||||| ||||| || |||||||| ||||| || || ||||||||||||||| | | Sbjct 32808 ACGATACCGTCGGAAGCGGCGAAGAAAGCAAGGACGTGGGAGATAAAGTGGCGCTCGTTG 32867 Query 75204 TCAGTGAG---TTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTC 75260 || |||| |||||||| || | || ||| | | || |||||||| | ||| Sbjct 32868 TCGTTGAGCTTGTTGTCCCAGTCGTGAAGATCCTTGGAAAGGTCGATCTCCTCTGCGGTC 32927 Query 75261 CAGAA 75265 ||||| Sbjct 32928 CAGAA 32932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547175423933600