Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq67 111 1e-19 seq10 89.7 3e-13 >seq67 Length=99859 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 34510 GTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCG 34569 ||||||||||| |||||||| ||||| ||||| || || | ||||| | || ||||| Sbjct 37666 GTGCTCTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGACCATCTTCCAACTGCTTACCA 37725 Query 34570 GCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTT 34629 ||||| || | |||||| ||||| || || | ||||||||||| |||| || | || Sbjct 37726 GCAAAGATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCCTGGATC-TTGGCCTT 37784 Query 34630 AACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGT 34688 ||| | ||| ||||| ||| ||||||| || || ||||| || || | ||| Sbjct 37785 GACGTTGTCAATCGTGTCCGAAGACTCGACTTCCAATGTGATGGTTTTGCCAGTGAGCGT 37844 Query 34689 TTTCACAAAAATCTGCAT 34706 || ||||| |||||||| Sbjct 37845 CTTGACAAAGATCTGCAT 37862 Score = 109 bits (120), Expect = 3e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 34509 AGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACC 34568 |||||||||||| |||||||| || || || || || || ||||||| || || ||||| Sbjct 37893 AGTGCTCTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGACCGTCTTCCAGCTGCTTACC 37952 Query 34569 GGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTT 34628 |||||| || || ||||| ||||| || || | || |||||||| |||| || | | Sbjct 37953 GGCAAAGATCAAGCGCTGCTGGTCAGGTGGGATACCTTCCTTGTCCTGGATC-TTGGCCT 38011 Query 34629 TAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACG 34687 | ||| | ||| ||||| ||| ||||||| || ||||| || || || | | Sbjct 38012 TGACGTTGTCAATCGTGTCCGAAGACTCGACTTCCAACGTAATCGTCTTTCCCGTGAGTG 38071 Query 34688 TTTTCACAAAAATCTGCAT 34706 | || ||||| |||||||| Sbjct 38072 TCTTTACAAAGATCTGCAT 38090 >seq10 Length=322828 Score = 89.7 bits (98), Expect = 3e-13 Identities = 146/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||| || |||||| |||||||| || || ||||| || || |||| || || || Sbjct 83713 TGGAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCGAGCTGC 83654 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 ||||||||||| || | ||||| ||||| || || | ||||||||||| |||| || Sbjct 83653 TTACCGGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATC-TT 83595 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | || || | || ||||| ||| || || | ||| || || ||||| || Sbjct 83594 GGCCTTGACATTGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATGGTCTTACCCGT 83535 Query 34683 TAACGTTTTCACAAAAATCTGCATGTTG 34710 | || || ||||| |||||||| ||| Sbjct 83534 GAGGGTCTTGACAAAGATCTGCATCTTG 83507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314706846230156