Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq67 118 9e-22 seq10 116 3e-21 seq18 84.2 2e-11 >seq67 Length=99859 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||| |||||| | ||||| || || || ||| | || Sbjct 38318 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAGACCATTACCCTCGAGGTCGAATCTTCG 38259 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | ||||| || || || ||||| || ||||| || || ||||| Sbjct 38258 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGATCAG 38199 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || ||||| || | || ||| | ||| | || || |||||| Sbjct 38198 CAGCGTCTCATCTTTGCAGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAAC 38139 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||| |||||| | || | || ||||| | || ||||| || Sbjct 38138 ATTCAGAAGGAATCGACCCTTCACCTTGTCTTGCGACTCCGCGGTGGTAT 38089 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| |||||||| || || || || ||| | ||||| | ||||| || | || Sbjct 38090 ATGCAGATCTTTGTAAAGACACTCACGGGAAAGACGATTACGTTGGAAGTCGAGTCTTCG 38031 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||| | ||||| || || || ||||| ||||| || ||||| || || Sbjct 38030 GACACGATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATCCCACCTGACCAG 37971 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | ||||| || || |||||||| || || | || || |||||| Sbjct 37970 CAGCGCTTGATCTTTGCCGGTAAGCAGCTGGAAGACGGTCGCACGCTCTCGGACTACAAC 37911 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||| || || || | || | || ||||| || || || Sbjct 37910 ATTCAGAAGGAGAGCACTTTGCACCTCGTACTTCGATTGCGCGGAGGTAT 37861 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || ||||| | || || | ||||| || | || Sbjct 37862 ATGCAGATCTTTGTCAAGACGCTCACTGGCAAAACCATCACATTGGAAGTCGAGTCTTCG 37803 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||| | ||||| || || || ||||| || || || ||||| || || Sbjct 37802 GACACGATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCACCTGACCAG 37743 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || || || |||||||| || || |||||||||||||| Sbjct 37742 CAGCGTCTGATCTTTGCTGGTAAGCAGTTGGAAGATGGTCGCACTCTTTCCGATTACAAC 37683 Query 27168 ATTCAAAAGGAGTCGACCTTACA 27190 ||||| |||||| ||||| || Sbjct 37682 ATTCAGAAGGAGAGCACCTTGCA 37660 >seq10 Length=322828 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||||||||| | || ||||| || || ||| |||| Sbjct 156566 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACGATCACTCTCGAGGTCGAATCGTCG 156507 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || ||||| ||||| |||||||| ||||| || || Sbjct 156506 GACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAAGGCATTCCACCTGACCAG 156447 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | || || || || | || || | || | ||||| |||||| Sbjct 156446 CAGCGACTCATCTTTGCTGGAAAGCAGCTCGAGGATGGCCGCACTTTGTCCGACTACAAC 156387 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| |||||||| ||| | || |||| ||||| | || || || Sbjct 156386 ATTCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGTCTCCGTGGAGG 156340 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||| || |||||| | || || || || || || | ||| Sbjct 156794 ATGCAGATCTTTGTCAAGACTCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCC 156735 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || || || || || || || || ||||| ||||| Sbjct 156734 GACACCATTGACAACGTCAAGGCCAAGATCCAGGATAAGGAGGGTATTCCACCTGATCAG 156675 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | |||||||| || | |||||| | || | || ||||||||| Sbjct 156674 CAGCGACTCATCTTTGCCGGCAAGCAGCTCGAAGACGGCCGCACGCTCTCTGATTACAAC 156615 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||||||||| | || | || | ||| |||| ||||| || Sbjct 156614 ATCCAGAAGGAGTCGACGCTCCACCTCGTCCTCCGTCTGCGTGGTGGTAT 156565 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || || ||| | || || || || || || | || Sbjct 83511 ATGCAGATCTTTGTCAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTTGAGTCTTCG 83570 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || || || ||||| || || || || ||||| || Sbjct 83571 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAG 83630 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||| || || | || ||| | ||| |||| || |||||| Sbjct 83631 CAGCGCCTGATCTTTGCCGGTAAGCAGCTCGAGGACGGCCGTACCCTTTCGGACTACAAC 83690 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| |||||||||||| | || | || | || |||| ||||| Sbjct 83691 ATTCAGAAGGAGTCGACCCTCCACCTCGTGCTTCGCCTGCGTGGTGG 83737 >seq18 Length=237310 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAA 27071 || || ||| | ||||| ||||| ||||| | || ||| | || || | ||||| Sbjct 132418 ACAGGTAAGACCATTACCCTTGAGGTGGAGTCCTCGGACACCATCGACAATGTCAAGGCC 132477 Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || ||||| ||||| || || || || ||||| || ||||| | || | ||||| || Sbjct 132478 AAGATTCAGGACAAGGAGGGTATCCCCCCCGACCAGCAGCGCCTGATCTTTGCCGGAAAG 132537 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 || | || ||| | || | || || |||||||| || |||||||||||| | || Sbjct 132538 CAGCTCGAGGACGGCCGCACGCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTCCAC 132597 Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217 | || | ||| |||| ||||| || Sbjct 132598 CTTGTCCTCCGTCTGCGTGGTGGTAT 132623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434886150800640