Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq10 176 1e-38 seq67 165 2e-35 seq18 129 1e-24 >seq10 Length=322828 Score = 176 bits (194), Expect = 1e-38 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || || ||||| || |||||||| ||||| | || || | || ||| Sbjct 156583 AGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCAGAGAGCGTGCGGCCGTCT 156642 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| || || || || ||||| |||| || ||||| ||| Sbjct 156643 TCGAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGATCAGGTGGAATACCCTCCTTATCC 156702 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| || |||||||| ||| || |||||||| ||||| ||| Sbjct 156703 TGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTC 156762 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||||||||| ||||| | |||||| Sbjct 156763 TTGCCCGTGAGAGTCTTGACAAAGATCTGCAT 156794 Score = 167 bits (184), Expect = 5e-36 Identities = 166/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || || ||||| || |||| |||||| | || || Sbjct 83722 AGCACGAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAAAGGGTACGGCCGTCC 83663 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || || ||||| ||||| || ||||| || || | || ||||||||| Sbjct 83662 TCGAGCTGCTTACCGGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCC 83603 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||| || ||||||||||| ||||| ||| Sbjct 83602 TGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATGGTC 83543 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || |||||||| ||||| ||||| | |||||| || Sbjct 83542 TTACCCGTGAGGGTCTTGACAAAGATCTGCATCTT 83508 Score = 167 bits (184), Expect = 5e-36 Identities = 172/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | ||||| ||||| || |||||||| || || ||||| || || | | Sbjct 156342 TCCACGGAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAA 156401 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | ||||| || |||||||| || || ||||| || || || |||||||| |||| Sbjct 156402 AGTGCGGCCATCCTCGAGCTGCTTTCCAGCAAAGATGAGTCGCTGCTGGTCAGGTGGAAT 156461 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 |||||||||||||| ||||| || ||||| ||||||||||| || ||| ||||| Sbjct 156462 GCCTTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGACGATTCGACCTC 156521 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||||||||||| || || | ||||| ||||| | |||||| Sbjct 156522 GAGAGTGATCGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 156566 >seq67 Length=99859 Score = 165 bits (182), Expect = 2e-35 Identities = 169/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || |||| | |||||||||||| || || || || || ||||| || |||| ||||| Sbjct 38098 CGGAGTCGCAAGACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCCGAGAGGGTG 38157 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || || || |||||||||||||| ||||| || || || || |||||||||| || Sbjct 38158 CGGCCGTCCTCGAGCTGCTTGCCTGCAAAGATGAGACGCTGCTGATCAGGAGGAATGCCC 38217 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||||||||| || ||||| ||||| ||||| || ||| |||||||| Sbjct 38218 TCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAAGATTCGACCTCGAGG 38277 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || || | ||||| ||||| | |||||| Sbjct 38278 GTAATGGTCTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 38318 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | || || || || || || |||||||| || |||| ||||| | || || Sbjct 38335 AGGACCAAATGGAGGGTCGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCGTCC 38394 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| |||||||| || || ||||||| || ||||||||| Sbjct 38395 TCGAGCTGCTTTCCAGCGAAGATGAGGCGTTGCTGATCGGGAGGAATGCCCTCCTTGTCC 38454 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||| ||||| || || |||||||| ||||| ||| Sbjct 38455 TGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGAAGACTCTACCTCGAGGGTGATGGTC 38514 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||||| ||||| | |||||| Sbjct 38515 TTACCAGTCAGAGTCTTGACAAAGATCTGCAT 38546 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| | |||| ||| || || ||||| || |||| || || | || ||| Sbjct 37879 AGTACGAGGTGCAAAGTGCTCTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGACCGTCT 37938 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| | ||| || |||||||| || | |||||||||||| Sbjct 37939 TCCAGCTGCTTACCGGCAAAGATCAAGCGCTGCTGGTCAGGTGGGATACCTTCCTTGTCC 37998 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| || || ||||| || || || || | || |||||| Sbjct 37999 TGGATCTTGGCCTTGACGTTGTCAATCGTGTCCGAAGACTCGACTTCCAACGTAATCGTC 38058 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||||||| ||||||||||| | |||||| Sbjct 38059 TTTCCCGTGAGTGTCTTTACAAAGATCTGCAT 38090 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| | ||| ||| || || ||||| ||||| | ||| || | |||||| Sbjct 37651 AGGACGAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGACCATCT 37710 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||| || || ||||| || || || |||||||| || | || ||||||||| Sbjct 37711 TCCAACTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCC 37770 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| || || ||||| || || || || | ||||| || Sbjct 37771 TGGATCTTGGCCTTGACGTTGTCAATCGTGTCCGAAGACTCGACTTCCAATGTGATGGTT 37830 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| ||||| | |||||| Sbjct 37831 TTGCCAGTGAGCGTCTTGACAAAGATCTGCAT 37862 >seq18 Length=237310 Score = 129 bits (142), Expect = 1e-24 Identities = 145/193 (75%), Gaps = 1/193 (1%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || || ||||| || |||||||| || |||| || || | || || Sbjct 132605 AGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCC 132546 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || || ||||| ||||| || ||||| || || | || ||||||||| Sbjct 132545 TCGAGCTGCTTTCCGGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCC 132486 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || || ||||||||||| ||| || ||||| || || || ||| Sbjct 132485 TGAATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCCACCTCAAGGGTAATGGTC 132426 Query 211083 TTTCCCG-TGAGA 211094 || || | ||||| Sbjct 132425 TTACCTGTTGAGA 132413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159063900101180