Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq67 102 7e-17 seq10 82.4 7e-11 >seq67 Length=99859 Score = 102 bits (112), Expect = 7e-17 Identities = 145/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 39088 GTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCC 39147 |||||||| || || || || ||||||| ||| || || | || || | ||| || || Sbjct 37666 GTGCTCTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGACCATCTTCCAACTGCTTACCA 37725 Query 39148 GCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTT 39206 ||||| || |||||||||||||| |||||| | | ||| |||||| ||| || || Sbjct 37726 GCAAAGATCAGACGCTGCTGGTCAGGTGGG-ATACCCTCCTTGTCCTGGATCTTGGCCTT 37784 Query 39207 GAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCG 39265 || ||| | | | ||| || ||||| || |||| ||||| |||| || || |||| Sbjct 37785 GA-CGTTGTCAATCGTGTCCGAAGACTCGACTTCCAATGTGATGGTTTTGCCAGTGAGCG 37843 Query 39266 TTTTAACAAAGATTTGCAT 39284 | || |||||||| ||||| Sbjct 37844 TCTTGACAAAGATCTGCAT 37862 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 39088 GTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCC 39147 |||||||| || || || || || || | || || || |||| || ||||| || || Sbjct 37894 GTGCTCTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGACCGTCTTCCAGCTGCTTACCG 37953 Query 39148 GCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTT 39206 ||||| || | ||||||||||| |||||| | | || |||||| ||| || || Sbjct 37954 GCAAAGATCAAGCGCTGCTGGTCAGGTGGG-ATACCTTCCTTGTCCTGGATCTTGGCCTT 38012 Query 39207 GAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCG 39265 || ||| | | | ||| || ||||| || |||| ||| || | |||||||| || | Sbjct 38013 GA-CGTTGTCAATCGTGTCCGAAGACTCGACTTCCAACGTAATCGTCTTTCCCGTGAGTG 38071 Query 39266 TTTTAACAAAGATTTGCAT 39284 | || |||||||| ||||| Sbjct 38072 TCTTTACAAAGATCTGCAT 38090 >seq10 Length=322828 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || || || | ||| || || |||| || ||||| || || ||||| Sbjct 83702 CTCCTTCTGAATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCGAGCTGCTTACCGGCAAA 83643 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || || ||||||||||||| ||| | | ||| |||||| ||| || |||| | Sbjct 83642 GATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATT 83583 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | || || ||||| || || | ||||| | || ||||| || || || || Sbjct 83582 GTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGAC 83523 Query 39273 AAAGATTTGCATCTT 39287 |||||| |||||||| Sbjct 83522 AAAGATCTGCATCTT 83508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429514545463916