Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq67 104 2e-17 seq10 98.7 7e-16 >seq67 Length=99859 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || ||||||||||| ||||| || | ||||| || || || Sbjct 38090 ATGCAGATCTTTGTAAAGACACTCACGGGAAAGACGATTACGTTGGAAGTCGAGTCTTCG 38031 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || ||||| |||||| | || || || || Sbjct 38030 GACACGATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATCCCACCTGACCAG 37971 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| || || |||||||| || || |||||||||| ||||| | || |||||| Sbjct 37970 CAGCGCTTGATCTTTGCCGGTAAGCAGCTGGAAGACGGTCGCACGCTCTCGGACTACAAC 37911 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || ||| ||| || || | || | | ||||| ||||| Sbjct 37910 ATTCAGAAGGAGAGCACTTTGCACCTCGTACTTCGATTGCGCGGAGG 37864 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || ||||| || ||||| ||||| | ||||| || || || Sbjct 37862 ATGCAGATCTTTGTCAAGACGCTCACTGGCAAAACCATCACATTGGAAGTCGAGTCTTCG 37803 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || ||||| || ||| | || || || || Sbjct 37802 GACACGATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCACCTGACCAG 37743 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||| || || || ||||||| | |||||| | |||||||||| Sbjct 37742 CAGCGTCTGATCTTTGCTGGTAAGCAGTTGGAAGATGGTCGCACTCTTTCCGATTACAAC 37683 Query 23791 ATACAAAAAGAGTCCACATTACA 23813 || || || ||| ||| || || Sbjct 37682 ATTCAGAAGGAGAGCACCTTGCA 37660 >seq10 Length=322828 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || |||||||| || || ||||| ||||| || || ||| | Sbjct 156794 ATGCAGATCTTTGTCAAGACTCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCC 156735 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || || || || ||| | || || ||||| Sbjct 156734 GACACCATTGACAACGTCAAGGCCAAGATCCAGGATAAGGAGGGTATTCCACCTGATCAG 156675 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||||||||| || || ||||||| ||||| | ||||||||| Sbjct 156674 CAGCGACTCATCTTTGCCGGCAAGCAGCTCGAAGACGGCCGCACGCTCTCTGATTACAAC 156615 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 156614 ATCCAGAAGGAGTCGAC 156598 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||| | || || || |||||||||||||| || || || || Sbjct 156566 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACGATCACTCTCGAGGTCGAATCGTCG 156507 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || ||| ||||| ||||| | || || || || Sbjct 156506 GACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAAGGCATTCCACCTGACCAG 156447 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||| || || || || || || | |||||||| ||| |||||| Sbjct 156446 CAGCGACTCATCTTTGCTGGAAAGCAGCTCGAGGATGGCCGCACTTTGTCCGACTACAAC 156387 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 156386 ATTCAGAAGGAGTCCAC 156370 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/203 (71%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || || ||||||||||| || || ||||| ||||| ||||| || Sbjct 83508 AAGATGCAGATCTTTGTCAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTTGAGTCT 83567 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 ||||||| | || ||| | || | || || ||||| || ||| | || || || Sbjct 83568 TCGGACACCATCGACAATGTCAAGGC-CAAGATCCAGGACAAGGAGGGTATCCCCCCCGA 83626 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGAT 23784 || ||||| | || |||||||| || || || || |||| || | |||| | || Sbjct 83627 CCAGCAGCGCCTGATCTTTGCCGGTAAGCAGCTCGAGGACGGCCGTACCCTTTCG--GAC 83684 Query 23785 TACAACATACAAAAAGAGTCCAC 23807 |||||||| || || ||||| || Sbjct 83685 TACAACATTCAGAAGGAGTCGAC 83707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337985163173456