Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq10 105 2e-17 seq67 98.7 2e-15 seq18 93.3 1e-13 >seq10 Length=322828 Score = 105 bits (116), Expect = 2e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| || || || || ||||| || |||||||||||||| | | || | || || Sbjct 156582 GAGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCAGAGAGCGTGCGGCCGTC 156641 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || || ||||| ||||| || | |||||| || | | || || ||||| || Sbjct 156642 TTCGAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGATCAGGTGGAATACCCTCCTTATC 156701 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || ||||| | || | | |||| || ||| || || || || || || Sbjct 156702 CTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGT 156761 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||||||||||||| || |||| |||||| Sbjct 156762 CTTGCCCGTGAGAGTCTTGACAAAGATCTGCAT 156794 >seq67 Length=99859 Score = 98.7 bits (108), Expect = 2e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| || || | || ||| || || ||||||||||||| | ||| | Sbjct 37644 GAGACGGAGGACGAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAATCGGAAAGAGTGCG 37703 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| | || || || ||||| || | ||||||||| | | ||| || || Sbjct 37704 ACCATCTTCCAACTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGTGGGATACCCTC 37763 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || ||||| | || | |||| ||| ||| ||||| | || Sbjct 37764 CTTGTCCTGGATCTTGGCCTTGACGTTGTCAATCGTGTCCGAAGACTCGACTTCCAATGT 37823 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| ||||| ||||| || |||| |||||| Sbjct 37824 GATGGTTTTGCCAGTGAGCGTCTTGACAAAGATCTGCAT 37862 >seq18 Length=237310 Score = 93.3 bits (102), Expect = 1e-13 Identities = 140/196 (71%), Gaps = 5/196 (3%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||||||||| || || || ||||| || ||||||||||| || | | || | || || Sbjct 132606 GAGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTC 132547 Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 || || ||||| ||||| ||||| || | ||||||||| | | ||| || ||||| Sbjct 132546 CTCGAGCTGCTTT--CCGGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTG 132489 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 || ||||| || |||||| | || | | |||| || ||| || ||||| ||||| Sbjct 132488 TCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCCACCTCAAGGGTAATG 132429 Query 152070 GTTTTGCCCG-TGAGA 152084 || || || | ||||| Sbjct 132428 GTCTTACCTGTTGAGA 132413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153733105292372