Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq10 183 6e-41 seq67 181 2e-40 seq18 143 6e-29 seq283 86.0 1e-11 seq57 86.0 1e-11 seq39 86.0 1e-11 >seq10 Length=322828 Score = 183 bits (202), Expect = 6e-41 Identities = 179/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||||||||| || || || | || || || || ||||||||||| | Sbjct 83738 ACCACCACGCAGGCGAAGCACGAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCCGA 83679 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || ||||| ||||| || || || ||||||||||||| || || ||||| || Sbjct 83678 AAGGGTACGGCCGTCCTCGAGCTGCTTACCGGCAAAGATCAGGCGCTGCTGGTCGGGGGG 83619 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| |||||||| || || || | ||||| |||||||||| || || Sbjct 83618 GATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCAAC 83559 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||||| ||||| ||||||||||| | ||||| || || |||||||| || Sbjct 83558 CTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGACAAAGATCTGCATCTT 83508 Score = 178 bits (196), Expect = 3e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || || || ||||| || | ||| || || || ||||||||||| | Sbjct 156339 ACCTCCACGGAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGA 156398 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | |||||||||||||| || || || || |||||||| | || || |||||| || Sbjct 156399 CAAAGTGCGGCCATCCTCGAGCTGCTTTCCAGCAAAGATGAGTCGCTGCTGGTCAGGTGG 156458 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || |||||||| || ||||| || || ||| | ||||| |||||||| | |||||| Sbjct 156459 AATGCCTTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGACGATTCGAC 156518 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||||||||||||| || ||||| ||||| || || |||||||| Sbjct 156519 CTCGAGAGTGATCGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 156566 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || || || || | ||| || || ||||||||||| |||| Sbjct 156567 ACCACCACGCAGACGGAGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCAGA 156626 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||| || || || || || ||||||||||| | || || || ||| || Sbjct 156627 GAGCGTGCGGCCGTCTTCGAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGATCAGGTGG 156686 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||| || |||||||| || || ||| | || || ||||| || | ||||| Sbjct 156687 AATACCCTCCTTATCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGGACTCGAC 156746 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| ||||| | |||||| || || |||||||| Sbjct 156747 CTCGAGGGTGATGGTCTTGCCCGTGAGAGTCTTGACAAAGATCTGCAT 156794 >seq67 Length=99859 Score = 181 bits (200), Expect = 2e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || |||| |||||||| || || || ||||| || || || ||||||||||| | Sbjct 37863 ACCTCCGCGCAATCGAAGTACGAGGTGCAAAGTGCTCTCCTTCTGAATGTTGTAGTCCGA 37922 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 |||||||| || || || || || || |||||||||||||| || || |||||| || Sbjct 37923 GAGCGTGCGACCGTCTTCCAGCTGCTTACCGGCAAAGATCAAGCGCTGCTGGTCAGGTGG 37982 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||| |||||||| |||||||| || || ||| | || || |||||||||| ||||| Sbjct 37983 GATACCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATCGTGTCCGAAGACTCGAC 38042 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| | || |||||||| ||||| | ||||| || || |||||||| Sbjct 38043 TTCCAACGTAATCGTCTTTCCCGTGAGTGTCTTTACAAAGATCTGCAT 38090 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || || | || || || | || ||| || || ||||||||||| | Sbjct 38091 ACCACCGCGGAGTCGCAAGACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCCGA 38150 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || || |||||||| | ||| || || ||| || Sbjct 38151 GAGGGTGCGGCCGTCCTCGAGCTGCTTGCCTGCAAAGATGAGACGCTGCTGATCAGGAGG 38210 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| || || ||| | ||||| |||||||||| |||||| Sbjct 38211 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAAGATTCGAC 38270 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| || || ||||| || ||||| ||||| || || |||||||| Sbjct 38271 CTCGAGGGTAATGGTCTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 38318 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || |||| ||| | || ||| || |||||||||||||| | Sbjct 38319 ACCACCACGGAGACGGAGGACCAAATGGAGGGTCGATTCCTTCTGGATGTTGTAGTCCGA 38378 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||| ||||| || || || || || ||||| | ||||| || || || Sbjct 38379 GAGGGTACGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATGAGGCGTTGCTGATCGGGAGG 38438 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| || || ||| | ||||| ||||| |||| || || Sbjct 38439 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGAAGACTCTAC 38498 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| |||||||| |||| |||||| || || |||||||| Sbjct 38499 CTCGAGGGTGATGGTCTTACCAGTCAGAGTCTTGACAAAGATCTGCAT 38546 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || || || || || || || ||||| || || || |||||||| || | Sbjct 37635 ACCGCCACGGAGACGGAGGACGAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAATCGGA 37694 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| ||||| ||||| || | || || || |||||||||| ||| || |||||| || Sbjct 37695 AAGAGTGCGACCATCTTCCAACTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGTGG 37754 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| |||||||| || || ||| | || || |||||||||| ||||| Sbjct 37755 GATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATCGTGTCCGAAGACTCGAC 37814 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| | ||||| || || || || | ||||| || || |||||||| Sbjct 37815 TTCCAATGTGATGGTTTTGCCAGTGAGCGTCTTGACAAAGATCTGCAT 37862 >seq18 Length=237310 Score = 143 bits (158), Expect = 6e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || || || || | || || || |||||||||||||| | Sbjct 132621 ACCACCACGCAGACGGAGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 132562 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||| ||||| || || || ||||||||||||| || || ||||| || Sbjct 132561 GAGCGTGCGGCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAGGCGCTGCTGGTCGGGGGG 132502 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| || ||||| || || || | ||||| |||||||| | || || Sbjct 132501 GATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCCAC 132442 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 || || || || |||||||| || Sbjct 132441 CTCAAGGGTAATGGTCTTACCTGT 132418 >seq283 Length=780 Score = 86.0 bits (94), Expect = 1e-11 Identities = 113/153 (74%), Gaps = 4/153 (3%) Strand=Plus/Minus Query 109934 AGATTGCAACATCATCAAATTGCGGGAACCCCCTAAAGCATATGATACCAAGGTTGATTG 109993 || |||| ||| ||||||||||||| || |||||||| | |||||||| | || Sbjct 409 AGCTTGCGACACTATCAAATTGCGGGGACGTCCTAAAGCTTTCAATACCAAGCCGGCGTG 350 Query 109994 TGAAAGCATCAGCTGGCCGAG--AACAGAACTCGGGTATGGTAAAAATTCATATGATGCC 110051 || || | |||||||| || || || |||||||||||||||| | |||| Sbjct 349 GAAACACAGTCGGTGGCCGAGTTAATAGCCCT-GGGTATGGTAAAAATTTGAAAGATGTT 291 Query 110052 ACAATGGGCAATCCGCAGCCAAGCCTCTAAAGG 110084 ||||||| |||||||||||||| | ||||||| Sbjct 290 ACAATGGATAATCCGCAGCCAAGTC-CTAAAGG 259 >seq57 Length=128583 Score = 86.0 bits (94), Expect = 1e-11 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 167288 GACGCCATAGCTCAGTTGGTTAGAGCGTTCGACTGTTAATCGAGAGGTCGTCGGTTCGAA 167347 ||| |||||||||||||||||||||||| ||||||||| ||||||| |||||||| Sbjct 315 GACTCCATAGCTCAGTTGGTTAGAGCGTAGCACTGTTAATGCTGAGGTCGGCGGTTCGAG 256 Query 167348 CCCGACTGGTGTCGTTT 167364 |||| |||| |||| || Sbjct 255 CCCGCCTGGGGTCGCTT 239 Score = 84.2 bits (92), Expect = 5e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 167117 GACGCCATAGCTCAGTTGGTTAGAGCGTTCGACTGTTAATCGAGAGGTCGTCGGTTCGAA 167176 ||| |||||||||||||||||||||||| ||||||||| ||||||| |||||||| Sbjct 315 GACTCCATAGCTCAGTTGGTTAGAGCGTAGCACTGTTAATGCTGAGGTCGGCGGTTCGAG 256 Query 167177 CCCGACTGGTGTCG 167190 |||| |||| |||| Sbjct 255 CCCGCCTGGGGTCG 242 Score = 84.2 bits (92), Expect = 5e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 167288 GACGCCATAGCTCAGTTGGTTAGAGCGTTCGACTGTTAATCGAGAGGTCGTCGGTTCGAA 167347 ||| |||||||||||||||||||||||| ||||||||| ||||||| |||||||| Sbjct 34850 GACTCCATAGCTCAGTTGGTTAGAGCGTAGCACTGTTAATGCTGAGGTCGGCGGTTCGAG 34791 Query 167348 CCCGACTGGTGTCG 167361 |||| |||| |||| Sbjct 34790 CCCGCCTGGGGTCG 34777 Score = 84.2 bits (92), Expect = 5e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 167117 GACGCCATAGCTCAGTTGGTTAGAGCGTTCGACTGTTAATCGAGAGGTCGTCGGTTCGAA 167176 ||| |||||||||||||||||||||||| ||||||||| ||||||| |||||||| Sbjct 34850 GACTCCATAGCTCAGTTGGTTAGAGCGTAGCACTGTTAATGCTGAGGTCGGCGGTTCGAG 34791 Query 167177 CCCGACTGGTGTCG 167190 |||| |||| |||| Sbjct 34790 CCCGCCTGGGGTCG 34777 >seq39 Length=153655 Score = 86.0 bits (94), Expect = 1e-11 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 167288 GACGCCATAGCTCAGTTGGTTAGAGCGTTCGACTGTTAATCGAGAGGTCGTCGGTTCGAA 167347 ||| |||||||||||||||||||||||| ||||||||| ||||||| |||||||| Sbjct 96784 GACTCCATAGCTCAGTTGGTTAGAGCGTAGCACTGTTAATGCTGAGGTCGGCGGTTCGAG 96725 Query 167348 CCCGACTGGTGTCGTTT 167364 |||| |||| |||| || Sbjct 96724 CCCGCCTGGGGTCGCTT 96708 Score = 84.2 bits (92), Expect = 5e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 167117 GACGCCATAGCTCAGTTGGTTAGAGCGTTCGACTGTTAATCGAGAGGTCGTCGGTTCGAA 167176 ||| |||||||||||||||||||||||| ||||||||| ||||||| |||||||| Sbjct 96784 GACTCCATAGCTCAGTTGGTTAGAGCGTAGCACTGTTAATGCTGAGGTCGGCGGTTCGAG 96725 Query 167177 CCCGACTGGTGTCG 167190 |||| |||| |||| Sbjct 96724 CCCGCCTGGGGTCG 96711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046659643895528