Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq67 156 3e-33 seq10 143 2e-29 seq18 111 1e-19 >seq67 Length=99859 Score = 156 bits (172), Expect = 3e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| | ||||||||||| || |||||||| || | ||| ||| |||| ||| Sbjct 37882 ACGAGGTGCAAAGTGCTCTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGACCGTCTTCC 37941 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| |||||||||||||| |||||||| || | || | ||||||||| ||| Sbjct 37942 AGCTGCTTACCGGCAAAGATCAAGCGCTGCTGGTCAGGTGGGATACCTTCCTTGTCCTGG 38001 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | || ||||| | || || || |||| ||||||||||||| Sbjct 38002 ATCTTGGCCTTGACGTTGTCAATCGTGTCCGAAGACTCGACTTCCAACGTAATCGTCTTT 38061 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||| ||||| || ||||| ||||| Sbjct 38062 CCCGTGAGTGTCTTTACAAAGATCTGCAT 38090 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | |||| ||| || |||||||| || ||||| || |||||||| || Sbjct 38088 CATACCACCGCGGAGTCGCAAGACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTC 38147 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| ||| |||| || |||||||| || |||||||| | |||||||||||| | Sbjct 38148 CGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCTGCAAAGATGAGACGCTGCTGATCAGG 38207 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | || ||||| ||| ||||| ||| | | | || ||||| | ||||| Sbjct 38208 AGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAAGATTC 38267 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| | ||||| ||||| || || | |||||| || ||||| ||||| Sbjct 38268 GACCTCGAGGGTAATGGTCTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 38318 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| | ||||||||||| || ||||||||||||| || ||| | || ||| Sbjct 37654 ACGAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGACCATCTTCC 37713 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | |||||| || |||||||||| ||||||||| || | || | ||| ||||| ||| Sbjct 37714 AACTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCCTGG 37773 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | || ||||| | || || || |||| || || || || Sbjct 37774 ATCTTGGCCTTGACGTTGTCAATCGTGTCCGAAGACTCGACTTCCAATGTGATGGTTTTG 37833 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| ||||| || ||||| ||||| Sbjct 37834 CCAGTGAGCGTCTTGACAAAGATCTGCAT 37862 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||| ||||||||||| || | ||| || |||| || |||||||| || || ||| Sbjct 38356 TCCTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCGTCCTCGAGCTGCTTTCCAGCGAAG 38415 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 || | || |||||||| | ||| | || ||||| ||| ||||| ||| | | Sbjct 38416 ATGAGGCGTTGCTGATCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 38475 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | || ||||||| || || ||||| | || || ||||| || || || ||||| || Sbjct 38476 TCGATCGTGTCGGAAGACTCTACCTCGAGGGTGATGGTCTTACCAGTCAGAGTCTTGACA 38535 Query 44327 AAGATTTGCATGATGTG 44343 ||||| |||||||| || Sbjct 38536 AAGATCTGCATGATCTG 38552 >seq10 Length=322828 Score = 143 bits (158), Expect = 2e-29 Identities = 164/219 (75%), Gaps = 1/219 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| ||||| |||||| |||||||||||||| | ||| ||| |||| || Sbjct 156586 ACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCAGAGAGCGTGCGGCCGTCTTCG 156645 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||||||||| | ||||||||||| | || | ||| ||||| ||| Sbjct 156646 AGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGATCAGGTGGAATACCCTCCTTATCCTGG 156705 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | |||||||||| ||| || ||||| | || || ||||| Sbjct 156706 ATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTG 156765 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATGATGTGAATG 44347 |||||||| ||||| || ||||| ||||| || ||||| Sbjct 156766 CCCGTGAGAGTCTTGACAAAGATCTGCAT-CTGCGAATG 156803 Score = 120 bits (132), Expect = 2e-22 Identities = 155/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| ||||| || || |||||| || |||||||| || | || || |||| || Sbjct 83720 CACGAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAAAGGGTACGGCCGTCCTC 83661 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| ||||||||||||| |||||||| || | || | ||| ||||| ||| Sbjct 83660 GAGCTGCTTACCGGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTG 83601 Query 44248 TATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||| ||| || ||| | |||||||| | || || ||||| | || || ||| Sbjct 83600 GATCTTGGCCTTGACATTGT--CGATGGTGTCCGAAGACTCAACCTCGAGGGTGATGGTC 83543 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || |||||||||||||| || ||||| ||||| Sbjct 83542 TTACCCGTGAGGGTCTTGACAAAGATCTGCAT 83511 >seq18 Length=237310 Score = 111 bits (122), Expect = 1e-19 Identities = 138/187 (74%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || |||||| ||||||||||| || | ||| ||| |||| || Sbjct 132602 ACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCG 132543 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||||||||||| |||||||| || | || | ||| ||||| ||| Sbjct 132542 AGCTGCTTTCCGGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGA 132483 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | |||||||| | ||| |||||||| | ||||| |||| Sbjct 132482 ATCTTGGCCTTGACATTGT--CGATGGTGTCCGAGGACTCCACCTCAAGGGTAATGGTCT 132425 Query 44307 TTCCCGT 44313 | || || Sbjct 132424 TACCTGT 132418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359964374044044