Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq10 147 5e-30 seq67 138 3e-27 seq18 136 1e-26 >seq10 Length=322828 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || | || || || |||||||| |||||||| ||| || ||| Sbjct 156563 CAGATCTTTGTCAAGACCTTGACCGGCAAGACGATCACTCTCGAGGTCGAATCGTCGGAC 156504 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| |||||||||||||| ||||| || || || |||||||| Sbjct 156503 ACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAAGGCATTCCACCTGACCAGCAG 156444 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| ||||| || ||||| |||||||| ||||| | ||| | |||| || ||| | Sbjct 156443 CGACTCATCTTTGCTGGAAAGCAGCTCGAGGATGGCCGCACTTTGTCCGACTACAACATT 156384 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 156383 CAGAAGGAGTCCACCCTGCACCTGGT 156358 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || |||||||| || || || |||||||||||||| || ||| ||| Sbjct 156791 CAGATCTTTGTCAAGACTCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCCGAC 156732 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| ||||| ||||| || || || || || || || ||||| Sbjct 156731 ACCATTGACAACGTCAAGGCCAAGATCCAGGATAAGGAGGGTATTCCACCTGATCAGCAG 156672 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| ||||| ||||| || ||||||||||| || | || || | ||||| ||| || Sbjct 156671 CGACTCATCTTTGCCGGCAAGCAGCTCGAAGACGGCCGCACGCTCTCTGATTACAACATC 156612 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 156611 CAGAAGGAGTCGACGCTCCACCTCGT 156586 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || ||||| || || || |||||||||||||| || || ||| Sbjct 83514 CAGATCTTTGTCAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTTGAGTCTTCGGAC 83573 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 83574 ACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAGCAG 83633 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || |||||||| || || | || ||| | || || ||| | Sbjct 83634 CGCCTGATCTTTGCCGGTAAGCAGCTCGAGGACGGCCGTACCCTTTCGGACTACAACATT 83693 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 83694 CAGAAGGAGTCGACCCTCCACCTCGT 83719 >seq67 Length=99859 Score = 138 bits (152), Expect = 3e-27 Identities = 151/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||||| || || || || |||||||||||||| || || ||| Sbjct 38543 CAGATCTTTGTCAAGACTCTGACTGGTAAGACCATCACCCTCGAGGTAGAGTCTTCCGAC 38484 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||| |||||||| || || || ||||| || |||||| Sbjct 38483 ACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGATCAGCAA 38424 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| ||||| |||||||| || || | || || | || || ||| || Sbjct 38423 CGCCTCATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGTACCCTCTCGGACTACAACATC 38364 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || ||||| || || ||| Sbjct 38363 CAGAAGGAATCGACCCTCCAT 38343 Score = 123 bits (136), Expect = 6e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || | || || || || || ||||||||||| ||| || ||| Sbjct 38315 CAGATCTTTGTCAAGACCTTGACTGGCAAGACCATTACCCTCGAGGTCGAATCTTCGGAC 38256 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||| |||||||| || || || ||||| || ||||| Sbjct 38255 ACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGATCAGCAG 38196 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || |||||||| || || | || || | || || ||| | Sbjct 38195 CGTCTCATCTTTGCAGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAACATT 38136 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || || ||||| || || || ||||| ||| ||||| Sbjct 38135 CAGAAGGAATCGACCCTTCACCTTGTCTTGCGACTC 38100 >seq18 Length=237310 Score = 136 bits (150), Expect = 1e-26 Identities = 145/190 (76%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 177941 TCTCA-CAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCA 177999 ||||| |||| || || || ||||| |||||||| ||| ||||||||||| || |||| Sbjct 132413 TCTCAACAGGTAAGACCATTACCCTTGAGGTGGAGTCCTCGGACACCATCGACAATGTCA 132472 Query 178000 AACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCG 178059 | |||||||||||||| || || ||||| || |||||||| || || ||||| |||| Sbjct 132473 AGGCCAAGATTCAGGACAAGGAGGGTATCCCCCCCGACCAGCAGCGCCTGATCTTTGCCG 132532 Query 178060 GAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACAC 178119 |||| |||||||| || || | || || | || || ||| |||| || || || || | Sbjct 132533 GAAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAACATCCAGAAGGAGTCGACCC 132592 Query 178120 TGCATCTTGT 178129 | || ||||| Sbjct 132593 TCCACCTTGT 132602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203639711914808