Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq113 102 2e-16 >seq113 Length=59678 Score = 102 bits (112), Expect = 2e-16 Identities = 847/1343 (63%), Gaps = 67/1343 (5%) Strand=Plus/Plus Query 281450 ACCTGGAGAAGTCTCCATGATTTTACCTTTGAACCCCTTGTACCACGGTTTCATTTCGAC 281509 ||| |||| | |||| || | ||| |||| || |||||||||||||||| || Sbjct 55802 ACCGGGAGCAAACTCCTCAATGTCACCGGTGAAGCCACGGTACCACGGTTTCATTGGAAC 55861 Query 281510 GAGGTCCTCTCCAGATATCAAACGCTTCACGTTGTCTACGATGTCTTTGGGATTATAACT 281569 | |||||| |||| || || || ||| | ||||| || | || || ||| | Sbjct 55862 AATGTCCTCACCAGCCATGCGTCGTCGCAAATTGGCGACGATCTCGTGCGGGTTGTAATT 55921 Query 281570 GGGAATGTTAGTAGACCAACCGGTTCCAATACCACTTGAACCATTTACCAAAATACTCGG 281629 ||| | || ||||||||||| || ||||| | ||| || | || | ||| Sbjct 55922 GGGGACAAAGGTGGACCAACCGGTACCGATACCTTCAGCACCGTTGAGCAGCACCTGCGG 55981 Query 281630 GATAATAGGTACATAACATTCTGGTTCAATTTTATCACCATCATCATACAAATACTTCAG 281689 | | ||| | || || | || || || | | ||||||||||| || || | || Sbjct 55982 CACCACAGGCATGTACCACTGAGGCTCGATGCTCTGACCATCATCATCCAGGTATTCAAG 56041 Query 281690 AAGGTTATCATCTGTATCGACGAAAACCTGTCGCGT---CTTAGGGTTCAGTTTCGTGAA 281746 | ||||| | | | ||| | || || ||| || ||| ||||| Sbjct 56042 CAAAGCGTCATCGTTCTGGGGGAAGAGAGCGCGAGTGATCTTGGG---CAGCGCGGTGAA 56098 Query 281747 GATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCAAACTGACCCTC 281806 |||||||| || || ||||||||||| ||| | | || || |||||| Sbjct 56099 AATATACCTGGCCGAGGCAGCATCTTTACCACCGAGCAAACGAGTACCGAATTGACCCCT 56158 Query 281807 CGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTGACGATTGT 281866 ||| | | |||| | ||| ||||| |||||| | | ||| || || ||||| || Sbjct 56159 TGGCTCGAGCAAGTTGACGTTGTTGCTACCGACGAAGTTCTGCGCGAGACCCACGATGGT 56218 Query 281867 CCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAACATAACCACTGAA 281926 | |||||| ||||||||||| || || || ||| || | ||| || Sbjct 56219 CATGGTAAGCGACTGTTCACCGTGGTGGTAAGCAGTGGTACCGGAGACGTGACCGACGAG 56278 Query 281927 CTGTGCTACCTTCACGTCTGAT-GTCAAG-TTGCGTTTGAAAGCGCAATATAATACTTTT 281984 ||| || ||||| | ||| | |||| ||||| ||||| | | | | || ||| Sbjct 56279 CTGAGCGACCTTGA--TCTCACCGTCACCCTTGCGGTTGAAGGTACCGAAGATGACCTTT 56336 Query 281985 CGTTGAGAAGGCTTGAAACCATCAACGACAGACGGAATGCTGCGTTCCAGGTCATACCGC 282044 |||||| ||||||| |||||| ||| | |||||||| || || || | | || Sbjct 56337 CGTTGACCTGGCTTGAGACCATCGACGGCCGACGGAATTGAACG---CATGTTGT-CGGC 56392 Query 282045 ----GAGAACAAAATAAGTTCCTTGTCAATGAAGTCGG-GAACGGGAACCTCGGGCTTCT 282099 ||||| | ||| || ||||||| ||||| |||| | | || | || | | | Sbjct 56393 CATTGAGAAGAGAATGAGCTCCTTGTTGATGAAATCGGCGTAAGGAATTCTATCGATG-T 56451 Query 282100 TGTGGTCAAGTTGGTTTCCCGGCTCGTATGCCGTC--ATCCACTCCTTGCGATCCTCGGC 282157 |||| || || | | |||| || ||| | | ||| | ||||||||| || || || || Sbjct 56452 TGTGATCGAGGTAGGTTCCAGG-TCGGAA-CTGTCGGAGCCACTCCTTTCGGTCATCCGC 56509 Query 282158 CCGAGTCTTGTTGAAAGAACGATCGATGAGCTCTCCAGAATCAGAAGTCCACGTA---AA 282214 | |||||||||||| | |||| |||||||| | | | || || ||| || Sbjct 56510 CTTCTTCTTGTTGAAAGCAAGATCAATGAGCTCGCGATCACCATCCTTCGTGGTATCGAA 56569 Query 282215 CGTCTTCATAAGAGTCTTCAGGTTGCTGAAGTAATGCTTGGCATC---AGTGCTGGAACT 282271 | | ||| | | | || | |||||| | ||||||||| || | || Sbjct 56570 AGGCAACATGTGCTTATCCATAGCACGGAAGTACTTCTTGGCATCTTGAGAGTCCGA--- 56626 Query 282272 CGTACCGAGACCCTTGTAATACTTGATTTGATA---CTTAGAATAATCCTTCGTGGT--- 282325 ||||||||||||||||| || ||||| | | ||| ||| | || || Sbjct 56627 GGTACCGAGACCCTTGTAGTATTTGATGCGCCAGCCCTT-------TCCATTGTTGTTCT 56679 Query 282326 -CTTCACCCAATCCTCGTAATCCGGAAGACTATAAAATTCGCGAACGTCCTTTCCTTTCT 282384 || | ||| | ||| || || | | | || | | | | ||| || || Sbjct 56680 CCTCCTTCCACGTCATGTACTCGGGGATGGTGAAGAAGGAGAGCTCCTTCTTACC---CT 56736 Query 282385 TGGCG-AC--CACGATAGGTGTGATGAACTTCTTCAA-GAAACCTGGAATTTCTAGGAG- 282439 ||| | || ||||| || ||||||||| || ||| |||||| ||||| | || || Sbjct 56737 TGGTGCACTTGACGATGGGAGTGATGAAC-TCGACAAGGAAACCGGGAATCTTGAGCAGC 56795 Query 282440 ACTGGGAAAACAGCTATGGAAAAAGTTCATGACAAGACC--AGAAATGTGAGTTCCGTCA 282497 |||| | | || | || ||||| |||| ||||| || |||||| || || Sbjct 56796 GATGGGTAGA-AGTGGTCGAGGAAGTTGATGATGAGACCCTTGATATGTGA--ACCATCG 56852 Query 282498 ACATCCGCGTCGGTCATGATCATCACATGACCGTATCTCAGAGAAGAAGTGTCTTTGTAC 282557 |||| |||||||||||||| | | ||||||| || | | ||| || Sbjct 56853 TGATCCTGATCGGTCATGATCATGATACTGCCGTATCGCAAGCTACTAACGTCAAGATAT 56912 Query 282558 ACTTTACCGGTTTGAAGGCCCAAAATTTGTTTGAGCGCGGTGATTTCTTCGTTCTTTGTG 282617 || ||| |||||| || | ||||| ||||| || |||||||| ||||||| || Sbjct 56913 TGCTTGCCGTGTTGAAGACCGAGAATTTCTTTGATGGCTTTGATTTCTGCGTTCTTCATG 56972 Query 282618 ATACTTG-CCACAGATGCATCGCGAACGTTCAGCAACTTACCGCGGAGAGGAAAAACACC 282676 || || | | || || || |||||||| || | |||||| ||||| ||||| ||||| Sbjct 56973 AT-CTGGTCGTGAGTGGCCTCACGAACGTTGAGAAGCTTACCACGGAGCGGAAAGACACC 57031 Query 282677 ATATCTCTCGCGACCGACCACGGACAGTCCTGCAATTGCAAGTG--TTGCTGCGGAATCT 282734 || | || ||||| || | || || |||| || || | ||| ||||| || Sbjct 57032 GTAGTTGTCACGACCCACTTCAACAAGGCCGGCAACAGCGAGAGCCTTG--GCGGAGTCA 57089 Query 282735 CCCTCCGTCAAGATGAGAGTACA 282757 || || || | ||||| ||||| Sbjct 57090 CCTTCGGTGAGAATGAGTGTACA 57112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057638847412430