Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq36 163 3e-35 seq67 122 1e-22 >seq36 Length=116313 Score = 163 bits (180), Expect = 3e-35 Identities = 448/681 (66%), Gaps = 8/681 (1%) Strand=Plus/Plus Query 53996 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 54055 || ||||| | |||||| || |||| | || || | ||||| |||||||| |||| | Sbjct 38720 GGGCACATGAGCGACCAATCACCGTTCTGCTCAACCCTCTTCATGAAGAGATCGGGAACC 38779 Query 54056 CAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 54115 || ||||| || || || | || | | ||| || || || ||||| | Sbjct 38780 CAGAGAGCGTAGAAGAGTTCACGGGCACGAACTTCTTCCTTACCGTGGTTCTTGCGCAAG 38839 Query 54116 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGC 54175 ||||||||| | | | ||| || ||||| || || | ||| |||| | | || || Sbjct 38840 TCGAGGAACTCAAAGACATCCGAGTGCCAAGGCTCAATGTAGATGGCAAAGGCACCGGGA 38899 Query 54176 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 54235 || ||||| || ||||| || | ||| | |||||||| || | || | | ||| ||| Sbjct 38900 CGCTTGTTACCACCCTGGTCGACGTAACGGGCGGTGTTGTTGAAGACACGAAGCATGGGA 38959 Query 54236 ATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTA 54295 | ||||| ||| |||| ||||| |||| || ||| ||| | | ||||| | Sbjct 38960 ACGATACCGTTGCTGACACCGTTGGTGCCGGCAATGTAGGAGCCAGTACCTCGAATGC-A 39018 Query 54296 CTAATTGAT-AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 54354 | | || | | ||| || || || || | || ||||| | || || || | || Sbjct 39019 GTGAATGTTCAAACCAATGCCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGT 39078 Query 54355 ATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAG--CTAGACATT 54412 || || ||||| || || |||||| ||||| ||| || |||||| | ||| | Sbjct 39079 GTCGTAAATGCCGTCGATCGAGTCATCCTTCATGGTAACAAGGAAACAGGACGAGAGCTG 39138 Query 54413 TGG-TGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 54471 ||| || || || || || || || | ||| || || ||||| ||||| | |||| Sbjct 39139 TGGGTGGGGAGTA---CCAGCGTTGAAGAGGGTTGGCGAGGCGTGAGTAAAGTACTTTTG 39195 Query 54472 AGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGC 54531 || | || |||||||||||||| || || || ||| ||||| || || || Sbjct 39196 CGACATGAGGTTGTACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTGAATACCAACAGC 39255 Query 54532 GACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTA 54591 |||||||| | ||||||||| || | ||| | | |||| ||| || |||||||| Sbjct 39256 AACACGCATGAGCATGTGCTGGGGACGCTCAGCAACCTTGCCGTTGATGCGGAGCAAGTA 39315 Query 54592 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 ||| || | ||| || || || || ||||||| ||||| || ||||| || || Sbjct 39316 GGAACGCTCGAGAGTCTTGAAGCCGAAGAAGTTGTAGTGGAAGTCGCGCTCGTAGATGAT 39375 Query 54652 AACTGAGTTGAGTTTATCCTT 54672 | | |||| || | ||||| Sbjct 39376 AGCCGAGTCAAGCTGGTCCTT 39396 >seq67 Length=86059 Score = 122 bits (134), Expect = 1e-22 Identities = 364/558 (65%), Gaps = 8/558 (1%) Strand=Plus/Plus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || ||||| ||| ||| ||||| ||||| | || | |||||||| || |||||| Sbjct 4636 CAGGCGAAGTCGGTGTGAAGACCTTCGTCGCGTGAGATGAGCTCGTTGGAGAAGGTGAGT 4695 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254 |||||||| || |||||||| || ||||| || ||||| || || || || || ||||| Sbjct 4696 CCGGGCATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAG 4755 Query 24255 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGC---GCTGTCATGT 24311 || || || ||||| |||||||||| || | ||| | | ||| || ||| Sbjct 4756 ATACCCTCAACTGCGGCAAAGGCAACGAGACGTTCGGCGAAGGTGGCTTTGCGGTCGCTG 4815 Query 24312 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 24371 ||||| ||||||| |||||||||| || || || || ||||| | || | | Sbjct 4816 ATCCAACGAAGAGCCCAGTCGGCCTTCTGCTTGACGACGGGGATGGTCTCGACGGCGTCA 4875 Query 24372 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 24431 ||||| | | | | | | || || || || || || | || || | Sbjct 4876 AAGAGGAATTCTCGCTGCTCAGGCTCACGAATGTAGGTGTCGATGAGGAGCGAGTAAGTC 4935 Query 24432 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 24491 || || |||||||| || || || || || || ||||| |||| |||||||| | | Sbjct 4936 TCGGAGTGAATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGCAGCC 4995 Query 24492 TGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 24551 || ||||| || || || || | | || || || || || || || || || Sbjct 4996 TGAACTTCGGAACTGAAACGCTCGACGAGGTTCTCGTTGACGATACCATCGGAAGCAGCG 5055 Query 24552 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATT---CCA 24607 || || || | || || ||||| | |||| || ||| || || || ||| Sbjct 5056 AAGAAGGCGAGGACGTGGGAGATAAAGTGACGCTCGT-TGTCGTTGAGCTTGTTGTCCCA 5114 Query 24608 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 24667 |||| || || || || | || | || || | |||||||| || ||||||||||| Sbjct 5115 GTCATGGAGGTCCTTGGAAAGGTCGATCTCCTCGGCGGTCCAAAAGGAAGCCTCTGCCTT 5174 Query 24668 TTTATACATATTCCAGAT 24685 || ||||| | ||| || Sbjct 5175 CTTGTACATTTGCCAAAT 5192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593620214615280