Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq53 131 1e-25 seq23 131 1e-25 >seq53 Length=94643 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| || | |||||| ||||||||||| |||||||| ||||| | Sbjct 56322 CCGCCACGAAGACGGAGGACAAGATGCAAGGTGGACTCCTTCTGAATGTTGTAGTCGGAA 56381 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | || || ||||| ||||| ||| | ||||| | ||||||||| || Sbjct 56382 AGGGTACGGCCATCTTCAAGCTGCTTGCCTGCAAAGATAAGACGCTGCTGGTCAGGAGGA 56441 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| ||||| || || | | ||| ||| || || ||| | Sbjct 56442 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATAGTGTCCGAGGACTCGACT 56501 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||||||||||||||||| || || |||||||| || ||||| Sbjct 56502 TCGAGCGTAATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 56548 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || ||||| ||||||| ||||| || | || || ||||| || || Sbjct 56580 GTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCTTCGAGCTGCTTACCA 56639 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | || |||| |||||| || || | |||||||||||| ||||| || Sbjct 56640 GCGAAGATGAGTCGCTGCTGATCGGGTGGGATGCCTTCCTTGTCCTGAATCTTGGCCTTG 56699 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | ||| || || || ||| || | ||| |||||||||||||| | || Sbjct 56700 ACATTGTCGATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 56759 Query 21159 TTGACAAATATTTGCAT 21175 |||||||| || ||||| Sbjct 56760 TTGACAAAGATCTGCAT 56776 >seq23 Length=140287 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| || | |||||| ||| ||||| || ||||| ||||||| Sbjct 2003 CCACCACGAAGACGGAGGACGAGATGCAAGGTGCTTTCCTTCTGGATGTTGTAGTCCGAG 1944 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 |||||| || |||| || ||||| || || ||| | ||||| | ||||||||| ||| Sbjct 1943 AGGGTTCGGCCGTCTTCGAGCTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCAGGGGGA 1884 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| || || | | ||| ||| || || ||| | Sbjct 1883 ATGCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCGATAGTGTCCGAGGACTCGACT 1824 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||||||||||||||||| || || ||||| || || ||||| Sbjct 1823 TCGAGCGTAATGGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 1777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422188896614276