Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq67 347 1e-90 seq53 143 3e-29 seq52 129 6e-25 seq100 120 3e-22 seq23 113 5e-20 >seq67 Length=86059 Score = 347 bits (384), Expect = 1e-90 Identities = 423/573 (74%), Gaps = 13/573 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| ||||| || || ||||||| ||||||| | ||||| Sbjct 5192 ATTTGGCAAATGTACAAGAAGGCAGAGGCTTCCTTTTGGACCGCCGAGGAGATCGACCTT 5133 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTG---AACGACAACGAGCGCCATTTCATCAAG 116752 ||||||||| |||||||| | | |||||||||||||| || || ||| Sbjct 5132 TCCAAGGACCTCCATGACTGGGACAACAAGCTCAACGACAACGAGCGTCACTTTATCTCC 5073 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| || ||||| ||||| || ||| || |||||||||||||| || ||||||||| Sbjct 5072 CACGTCCTCGCCTTCTTCGCTGCTTCCGATGGTATCGTCAACGAGAACCTCGTCGAGCGT 5013 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| | || || |||| |||||||| || |||||||| || || |||||| ||| Sbjct 5012 TTCAGTTCCGAAGTTCAGGCTGCCGAGGCTCGATGCTTCTATGGTTTCCAGATCATGATG 4953 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC----GTGCGCTCTTC 116928 |||||| | ||||| || | || ||| |||||||||||| ||| ||| || || Sbjct 4952 GAGAACATTCACTCCGAGACTTACTCGCTCCTCATCGACACCTACATTCGTGAGC-CTGA 4894 Query 116929 GGAG-GAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987 | || ||||| | |||| ||||| ||||||| || || |||||| |||||| Sbjct 4893 GCAGCGAGAATTCCTCTTTG----ACGCCGTCGAGACCATCCCCGTCGTCAAGCAGAAGG 4838 Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGG 117047 |||| ||||| || || |||||| || | | | ||| |||||| ||| || || || | Sbjct 4837 CCGACTGGGCTCTTCGTTGGATCAGCGACCGCAAAGCCACCTTCGCCGAACGTCTCGTTG 4778 Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107 |||| || || || ||||| ||||||| || ||| |||||| |||| || ||||||| Sbjct 4777 CCTTTGCCGCAGTTGAGGGTATCTTCTTCTCCGGCTCCTTCGCCTCCATCTTCTGGCTCA 4718 Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 |||| || || || |||||||| || || ||| ||||||||||||||| | ||||| | Sbjct 4717 AGAAGCGTGGTCTTATGCCCGGACTCACCTTCTCCAACGAGCTCATCTCACGCGACGAAG 4658 Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCTGTTCA 117200 |||| || |||||| ||||| | || |||| Sbjct 4657 GTCTTCACACCGACTTCGCCTGCCTCCTCTTCA 4625 >seq53 Length=94643 Score = 143 bits (158), Expect = 3e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| ||||| ||||||||| |||| || || || | Sbjct 56776 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCG 56717 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || |||| ||||| || |||||||| | || ||| Sbjct 56716 GACACCATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGGCATCCCACCCGATCAG 56657 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || |||||||||| ||| || || ||||| || || | ||||||||| ||||||||| Sbjct 56656 CAGCGACTCATCTTCGCTGGTAAGCAGCTCGAAGATGGCCGCACCCTCTCGGACTACAAC 56597 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| |||| || || || || Sbjct 56596 ATCCAGAAGGAGTCCACCCTCCACCTCGT 56568 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || ||||| ||||| || |||| ||||| || | Sbjct 56548 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACCATTACGCTCGAAGTCGAGTCCTCG 56489 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| |||||| || |||| ||||| |||||||| || | ||||| Sbjct 56488 GACACTATCGACAACG-TCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCA 56430 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || ||||| ||||| || || | || ||||| ||||||||| Sbjct 56429 GCAGCGTCTTATCTTTGCAGGCAAGCAGCTTGAAGATGGCCGTACCCTTTCCGACTACAA 56370 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| ||||||||| |||| ||||||| || Sbjct 56369 CATTCAGAAGGAGTCCACCTTGCATCTTGT 56340 >seq52 Length=95535 Score = 129 bits (142), Expect = 6e-25 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || ||||| |||||||| || ||||||||| |||| ||||| | Sbjct 17852 AAGATGCAGATCTTTGTTAAAACCCTCACGGGTAAGACCATCACCCTCGAGGTCGAGTCT 17793 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | | |||| |||||| || || | ||||| || || || ||| | || Sbjct 17792 TCGGACACCATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCTGA 17734 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| || ||||||| ||| || || ||||| || || | || |||||| ||||| Sbjct 17733 TCAGCAGCGTCTCATCTTCGCCGGTAAGCAGCTCGAAGATGGTCGTACCCTCTCGGACTA 17674 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||||| |||| || || || || Sbjct 17673 CAACATCCAGAAGGAATCCACCCTTCACCTCGT 17641 >seq100 Length=67640 Score = 120 bits (132), Expect = 3e-22 Identities = 138/183 (75%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 40717 GGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGAAAA 40775 || || ||||||||| | || || || | |||||| | | | |||| |||||| || Sbjct 61006 GGTAAGACCATCACCCTTGAGGTGGAGTCTTCCGACACCATCGACAACG-TCAAGGCCAA 61064 Query 40776 AATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACA 40835 || | ||||| ||||| |||||| | |||||||| || ||||||| ||| || || || Sbjct 61065 GATCCAGGACAAGGAGGGTATCCCCCCCGACCAGCAGCGTCTCATCTTCGCCGGTAAGCA 61124 Query 40836 GCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCT 40895 ||| || |||| ||||||||| ||||||||||||||||||||| | || || || || Sbjct 61125 GCTCGAGGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCTACCCTCCACCT 61184 Query 40896 AGT 40898 || Sbjct 61185 CGT 61187 >seq23 Length=140287 Score = 113 bits (124), Expect = 5e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || |||||||| || || || || || ||||||||| |||| || || | || Sbjct 1549 ATGCAGATCTTCGTAAAGACTCTGACCGGTAAGACCATCACCCTCGAGGTTGAGTCTTCC 1608 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || |||| ||||| ||||| ||||| | || || Sbjct 1609 GACACCATTGACAACG-TCAAGGCCAAGATTCAGGACAAGGAGGGGATCCCTCCCGATCA 1667 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||| | || || || ||||| || || | || || || |||||||| Sbjct 1668 GCAGCGTCTCATTTTTGCCGGAAAGCAGCTTGAGGATGGACGAACTCTTTCGGACTACAA 1727 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 |||||| |||||| | || ||||| Sbjct 1728 CATCCAAAAGGAGTCGACCCTGCA 1751 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || |||||||| || || |||||||| | || ||||| | | Sbjct 2005 ATGCAAATCTTTGTCAAGACGCTCACAGGAAAGACCATCACTTTGGAAGTCGAGTCTTCG 2064 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | |||||| || || | || || ||||| || || | || ||| Sbjct 2065 GACACGATCGACAATGTCAAGGCCAAGATCCAGGATAAGGAGGGTATTCCTCCCGATCAG 2124 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||||||||||| || || || ||| |||| |||| |||||||| || |||||| Sbjct 2125 CAACGACTCATCTTTGCTGGTAAGCAGTTGGAAGACGGTCGCACCCTTTCGGATTACAAC 2184 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || |||||||| ||| |||| || || ||||| ||| | || || Sbjct 2185 ATTCAGAAGGAAAGCACCTTGCACCTTGTCTTGCGATTGCGAGGTGG 2231 Score = 111 bits (122), Expect = 2e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| ||||| || |||| ||||| || | Sbjct 1777 ATGCAGATTTTCGTCAAGACCTTGACCGGCAAGACCATTACGCTCGAAGTCGAGTCCTCG 1836 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || || | ||||| || ||||| ||| | ||||| Sbjct 1837 GACACTATCGACAACGTT-AAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCA 1895 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || || || ||||| || |||| || |||||| |||||||| Sbjct 1896 GCAGCGTCTTATCTTTGCTGGAAAGCAGCTCGAAGACGGCCGAACCCTCTCGGACTACAA 1955 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| ||| ||||||| || Sbjct 1956 CATCCAGAAGGAAAGCACCTTGCATCTCGT 1985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515131219881360