Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq23 143 2e-29 seq53 138 1e-27 seq52 107 2e-18 seq100 93.3 4e-14 seq36 84.2 2e-11 >seq23 Length=140287 Score = 143 bits (158), Expect = 2e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| ||||| |||||||| || | ||| || |||||| Sbjct 1757 ACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCCGAAAGAGTTCGTCCATCCTCA 1698 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||| || | ||||||||||||||||||||||| || ||||||||||| | Sbjct 1697 AGCTGCTTTCCGGCAAAAATGAGACGCTGCTGATCGGGAGGGATCCCCTCCTTGTCCTGA 1638 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | |||||| | ||| ||||||| ||| | || || Sbjct 1637 ATCTTGGCCTTGACGTTGTCAATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTA 1578 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATGGC 118741 ||||||||||| ||||| || ||||||||||| Sbjct 1577 CCGGTCAGAGTCTTTACGAAGATCTGCATGGC 1546 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 || |||||||| |||||||| |||| ||||||||||| || || || ||||| |||||| Sbjct 1931 TCTTCGAGCTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCAGGGGGAATGCCTTCCTTG 1872 Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACC 118703 || || || ||||| | |||| ||||||| | |||||| |||| || | Sbjct 1871 TCCTGGATCTTGGCCTTAACGTTGTCGATAGTGTCCGAGGACTCGACTTCGAGCGTAATG 1812 Query 118704 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||||||||| || || || ||||||||||| Sbjct 1811 GTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 1777 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || |||| ||| || | ||| | || || || |||||||||||||| Sbjct 2233 TACCACCTCGCAATCGCAAGACAAGGTGCAAGGTGCTTTCCTTCTGAATGTTGTAATCCG 2174 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||||| || || | ||| || ||||| ||||||| || ||||||||||||| Sbjct 2173 AAAGGGTGCGACCGTCTTCCAACTGCTTACCAGCAAAGATGAGTCGTTGCTGATCGGGAG 2114 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || |||||||| || || || || || | |||| ||||||| ||||| Sbjct 2113 GAATACCCTCCTTATCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCCGAAGACTCGA 2054 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | || | || || || || || || || ||||| || ||||| Sbjct 2053 CTTCCAAAGTGATGGTCTTTCCTGTGAGCGTCTTGACAAAGATTTGCAT 2005 >seq53 Length=94643 Score = 138 bits (152), Expect = 1e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| || | ||||| ||| |||||||| Sbjct 56573 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCTTCGAGCTG 56632 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || |||||| ||||||| |||||||||||||| || ||||| |||||||| ||| || Sbjct 56633 CTTACCAGCGAAGATGAGTCGCTGCTGATCGGGTGGGATGCCTTCCTTGTCCTGAATCTT 56692 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| |||||||| | ||| ||||||| ||| | || |||||||| Sbjct 56693 GGCCTTGACATTGTCGATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGT 56752 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 || || || ||||| |||||||| Sbjct 56753 GAGGGTCTTGACAAAGATCTGCAT 56776 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || ||||||||||| ||| | || || ||| || ||||| || || Sbjct 56352 GTGGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCATCTTCAAGCTGCTTGCCT 56411 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| ||||||||||| || ||||| |||||||||||||| ||| || || Sbjct 56412 GCAAAGATAAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTG 56471 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||||||| | |||||| |||| || | || |||||||||| ||| Sbjct 56472 ACGTTGTCGATAGTGTCCGAGGACTCGACTTCGAGCGTAATGGTCTTGCCGGTCAAAGTC 56531 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 56532 TTGACAAAGATCTGCAT 56548 >seq52 Length=95535 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || || || |||||||| || | || || ||| |||||||| || || Sbjct 17653 GTGGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGACCATCTTCGAGCTGCTTACCG 17712 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| ||||||||||||||||||| || || || || |||||||| || || || Sbjct 17713 GCGAAGATGAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTG 17772 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| |||||||| ||||||||||| ||| | || || || || || ||| Sbjct 17773 ACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTT 17832 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 17833 TTAACAAAGATCTGCAT 17849 >seq100 Length=67640 Score = 93.3 bits (102), Expect = 4e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| |||||||| || || |||||||| || | ||||| ||||||||||| Sbjct 61182 GTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTG 61123 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || || ||| |||||||||||||||| ||||| || || ||||||||||| Sbjct 61122 CTTACCGGCGAAGATGAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTC 61072 >seq36 Length=116313 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/137 (74%), Gaps = 3/137 (2%) Strand=Plus/Plus Query 134213 CAAGTTGAGAAACTCATAAATTTCCGGATGCCACGGCTCGATGTAGGCGGCGAGGGCACC 134272 ||||| ||| |||||| | | |||| ||||| ||||| |||||| ||| | |||||| Sbjct 38836 CAAGTCGAGGAACTCAAAGACATCCGAGTGCCAAGGCTCAATGTAGATGGCAAAGGCACC 38895 Query 134273 TTTTCGCTT---ACCACCCTGGTCGACGTGACGCACCATGTTGTTGAAGACTCTCAACAT 134329 ||||| ||||||||||||||||| ||| | ||||||||||||| | | ||| Sbjct 38896 GGGACGCTTGTTACCACCCTGGTCGACGTAACGGGCGGTGTTGTTGAAGACACGAAGCAT 38955 Query 134330 ATTGACGAGACCGCTGC 134346 |||| |||| ||| Sbjct 38956 GGGAACGATACCGTTGC 38972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433758170085412