Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq23 143 3e-29 seq53 111 2e-19 seq52 93.3 5e-14 seq100 89.7 6e-13 >seq23 Length=140287 Score = 143 bits (158), Expect = 3e-29 Identities = 166/220 (75%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||| || | ||||| ||||||||||| |||||||||||||||| |||||| || | Sbjct 2448 ACGCAAAACTAGGTGCAAGGTGCTCTCCTTCTGAATATTGTAATCAGACAGAGTTCGTCC 2389 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || | ||| |||||||| || || | ||||||||||||| || | | ||||| Sbjct 2388 ATCCTCCAACTGTTTACCAGCAAAGATCAAACGCTGCTGGTCGGGAGGAATACCTTCCTT 2329 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCG 43143 |||| ||| | || | ||||| | | | ||||| |||| ||||| |||| | Sbjct 2328 GTCC-TGAATCTTGGCTTTGACATTGTCAATGGTGTCCGAGCTC---TCCACCTCGAGTG 2273 Query 43144 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| |||||||| || |||||||| |||||||| ||||| Sbjct 2272 TGATCGTTTTGCCAGTAAGCGTCTTGACAAAGATCTGCAT 2233 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||| || ||||| || | ||||| ||||| ||||| ||||| |||||||| | Sbjct 2231 CCACCTCGCAATCGCAAGACAAGGTGCAAGGTGCTTTCCTTCTGAATGTTGTAATCCGAA 2172 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || |||| || | |||||||||||| || |||||||| ||||| |||| || Sbjct 2171 AGGGTGCGACCGTCTTCCAACTGCTTACCAGCAAAGATGAGTCGTTGCTGATCGGGAGGA 2112 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | |||||| ||| ||| || |||| | | | |||||| || || || Sbjct 2111 ATACCCTCCTTATCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCCGAAGACTCGACT 2052 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||| || || || |||||||| |||||||||||||| Sbjct 2051 TCCAAAGTGATGGTCTTTCCTGTGAGCGTCTTGACAAAGATTTGCAT 2005 Score = 96.9 bits (106), Expect = 4e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 42980 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 43039 |||||| ||||| ||||| || || ||||| || | || || || |||| || ||||| Sbjct 1980 ATGCAAGGTGCTTTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGGCCGTCTTCGAGCTG 1921 Query 43040 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTT 43099 ||| ||||| || || || ||||||||||| | || | || ||||||||| || | | Sbjct 1920 CTTTCCAGCAAAGATAAGACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCC-TGGATCT 1862 Query 43100 TTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCG 43158 | | | | ||| | | | ||||| || || || |||| ||| ||||| ||||| | Sbjct 1861 TGGCCTTAACGTTGTCGATAGTGTCCGAGGACTCGACTTCGAGCGTAATGGTCTTGCCGG 1802 Query 43159 TTAGCGTCTTTACAAAGATTTGCAT 43183 | | ||||| || || || ||||| Sbjct 1801 TCAAGGTCTTGACGAAAATCTGCAT 1777 >seq53 Length=94643 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || || | || || ||||||||||||||||| Sbjct 56585 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCTTCGAGCTGCTTACCAGCGAA 56644 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 |||||||||||||| |||| || | || ||||||||| ||| | || | |||| Sbjct 56645 GATGAGTCGCTGCTGATCGGGTGGGATGCCTTCCTTGTCC-TGAATCTTGGCCTTGACAT 56703 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||| || || || |||| |||||||| ||||| || || ||||| | Sbjct 56704 TGTCGATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGA 56763 Query 43171 CAAAGATTTGCAT 43183 ||||||| ||||| Sbjct 56764 CAAAGATCTGCAT 56776 Score = 105 bits (116), Expect = 8e-18 Identities = 150/206 (73%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 42980 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 43039 |||||| ||| |||||| ||||| ||||| || | || || || | || || ||||| Sbjct 56345 ATGCAAGGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCATCTTCAAGCTG 56404 Query 43040 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTT 43099 ||| || || || || || ||||||||||| | || | || |||||||||| ||| | | Sbjct 56405 CTTGCCTGCAAAGATAAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC-TGAATCT 56463 Query 43100 TTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCC 43157 | | |||| ||| | | | ||||| || || || |||| ||| ||||| ||||| Sbjct 56464 TGGCCTTGA-CGTTGTCGATAGTGTCCGAGGACTCGACTTCGAGCGTAATGGTCTTGCCG 56522 Query 43158 GTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||| |||||||| ||||| Sbjct 56523 GTCAAAGTCTTGACAAAGATCTGCAT 56548 >seq52 Length=95535 Score = 93.3 bits (102), Expect = 5e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || ||||| || | || || || | || || ||||||||||| ||||| Sbjct 17659 TCCTTCTGGATGTTGTAGTCCGAGAGGGTACGACCATCTTCGAGCTGCTTACCGGCGAAG 17718 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||| |||||||| || | || | | ||||||||| ||| || |||| ||| Sbjct 17719 ATGAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTT 17777 Query 43113 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | ||||| || || || |||| |||||||| || ||||| || || || || Sbjct 17778 GTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTTTTAAC 17837 Query 43172 AAAGATTTGCATTTT 43186 |||||| ||||| || Sbjct 17838 AAAGATCTGCATCTT 17852 >seq100 Length=67640 Score = 89.7 bits (98), Expect = 6e-13 Identities = 121/166 (73%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || || |||| || ||||||||||| ||||| Sbjct 61170 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAA 61111 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||||| || | | |||||||||| ||| || |||| ||| Sbjct 61110 GATGAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 61052 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCC 43156 | | | |||||| || ||||| || | |||||||| || || Sbjct 61051 TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTCTTACC 61006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571719954997080