Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq53 116 2e-21 seq23 113 3e-20 seq52 100 2e-16 seq100 82.4 5e-11 >seq53 Length=94643 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | || || || || || || || ||||| |||||||||||||| Sbjct 56322 CCGCCACGAAGACGGAGGACAAGATGCAAGGTGGACTCCTTCTGAATGTTGTAGTCGGAA 56381 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || |||| | || || | |||||||||||| || || || ||||||||||| || Sbjct 56382 AGGGTACGGCCATCTTCAAGCTGCTTGCCTGCAAAGATAAGACGCTGCTGGTCAGGAGGA 56441 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | | || | || | || ||||| Sbjct 56442 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATAGTGTCCGAGGACTCGACT 56501 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||| ||||| |||||||| | ||| || |||||||||||||| Sbjct 56502 TCGAGCGTAATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 56548 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| || || ||| | || || | |||||| || ||||| Sbjct 56586 TCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCTTCGAGCTGCTTACCAGCGAAG 56645 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||| |||||||| ||| || | || |||||||| ||||| ||| | || | Sbjct 56646 ATGAGTCGCTGCTGATCGGGTGGGATGCCTTCCTTGTCCTGAATCTTGGCCTTGACATTG 56705 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | || || || || | |||||||| ||||||||||| || || ||| Sbjct 56706 TCGATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACA 56765 Query 34379 AAGATCTGCATC 34390 |||||||||||| Sbjct 56766 AAGATCTGCATC 56777 >seq23 Length=140287 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || |||| | || || ||||| || || ||||| ||||| |||||||| || || Sbjct 2231 CCACCTCGCAATCGCAAGACAAGGTGCAAGGTGCTTTCCTTCTGAATGTTGTAATCCGAA 2172 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| ||||||||||| || || || ||||| || ||||| ||| || Sbjct 2171 AGGGTGCGACCGTCTTCCAACTGCTTACCAGCAAAGATGAGTCGTTGCTGATCGGGAGGA 2112 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||| || ||||| ||| | || | | |||| || | || ||||| Sbjct 2111 ATACCCTCCTTATCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCCGAAGACTCGACT 2052 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| || || ||||| || || |||||||| ||||| Sbjct 2051 TCCAAAGTGATGGTCTTTCCTGTGAGCGTCTTGACAAAGATTTGCAT 2005 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || || || || || ||||| ||||| ||||||||||| || || ||| |||| Sbjct 1988 AGGACGAGATGCAAGGTGCTTTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGGCCGTCT 1929 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || || || || || ||||||||||| ||| | || |||||||| Sbjct 1928 TCGAGCTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCC 1869 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | || | || ||||| || | ||| ||||| Sbjct 1868 TGGATCTTGGCCTTAACGTTGTCGATAGTGTCCGAGGACTCGACTTCGAGCGTAATGGTC 1809 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| | || || || || |||||||| Sbjct 1808 TTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 1777 Score = 89.7 bits (98), Expect = 3e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || || || ||||||||||| || || || | || || | |||||| || || ||| Sbjct 1739 TCCTTTTGGATGTTGTAGTCCGAAAGAGTTCGTCCATCCTCAAGCTGCTTTCCGGCAAAA 1680 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||| |||||||| ||| || | | ||||||||| ||||| ||| | | | Sbjct 1679 ATGAGACGCTGCTGATCGGGAGGGATCCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTG 1620 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | |||| || || || || | |||||||| || ||||| ||||| || || Sbjct 1619 TCAATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTACCGGTCAGAGTCTTTACG 1560 Query 34379 AAGATCTGCATCGC 34392 ||||||||||| || Sbjct 1559 AAGATCTGCATGGC 1546 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| ||||| | || || ||||| || || || || ||||| || ||||| || ||| Sbjct 2459 CCGCCACGCAGACGCAAAACTAGGTGCAAGGTGCTCTCCTTCTGAATATTGTAATCAGAC 2400 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||||||| || || || || || | |||||||||||| || Sbjct 2399 AGAGTTCGTCCATCCTCCAACTGTTTACCAGCAAAGATCAAACGCTGCTGGTCGGGAGGA 2340 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | |||||||| ||| || ||||| | || | | || | || | || || Sbjct 2339 ATACCTTCCTTGTCCTGAATC-TTGGCTTTGACATTGTCAATGGTGTCCGAGCTCTCCAC 2281 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| |||||||| || || || || |||||||||||||| Sbjct 2280 CTCGAGTGTGATCGTTTTGCCAGTAAGCGTCTTGACAAAGATCTGCAT 2233 >seq52 Length=95535 Score = 100 bits (110), Expect = 2e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| ||||||||||| || || ||| | || || | |||||| || ||||| Sbjct 17658 TTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGACCATCTTCGAGCTGCTTACCGGCGAA 17717 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||||| |||||||| || ||| | | |||||||| ||||| ||| | | Sbjct 17718 GATGAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTGACGTT 17777 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | || | || | || ||||| || | |||||||| || || ||||| ||||| || Sbjct 17778 GTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTTTTAAC 17837 Query 34378 AAAGATCTGCATC 34390 ||||||||||||| Sbjct 17838 AAAGATCTGCATC 17850 >seq100 Length=67640 Score = 82.4 bits (90), Expect = 5e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | ||| || ||||| ||||||||||| || || ||| |||| Sbjct 61190 AGGACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCC 61131 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || ||||| ||||| |||||||||||| ||| | | ||||||||| Sbjct 61130 TCGAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCC 61071 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | |||| || || || || | |||||||| Sbjct 61070 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTC 61011 Query 34358 TTGCC 34362 || || Sbjct 61010 TTACC 61006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323018210632160