Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20xerochloae_20[genbank_20GCA_5F001736075.1_202016-09-20] 13,661 sequences; 24,230,715 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq36 132 1e-25 >seq36 Length=116313 Score = 132 bits (146), Expect = 1e-25 Identities = 342/519 (66%), Gaps = 9/519 (2%) Strand=Plus/Minus Query 248893 CAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTC 248952 ||||||||| | ||||| || ||||| || |||||| | ||||| ||||||| || Sbjct 39276 CAGCACATGCTCATGCGTGTTGCTGTTGGTATTCACGGCCAGGACATCGAGAGCGCCATC 39217 Query 248953 GAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAAC 249012 |||||||||| | ||| || | | || || ||| | || || ||||||||| Sbjct 39216 GAGACGTACAACCTCATGTCGCAAAAGTACTTTACTCACGCCTCGCCAACCCTCTTCAAC 39157 Query 249013 GCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCT 249072 || ||||| | || ||||| || || || ||| || ||||| | || ||||| Sbjct 39156 GCTGGTACTCCCCACCCACAGCTCTCGTCCTGTTTCCTTGTTACCATGAAGGATGACTCG 39097 Query 249073 GTCGACGGCATTTATGACACGCTTAAACAGAC---GGCGAAGATTTCTAAATTCGCGGGC 249129 ||||||||||||| ||||| || | |||| || | ||| || || ||| || Sbjct 39096 ATCGACGGCATTTACGACACCCTCA---AGACCTGTGCCATGATCTCCAAGACCGCCGGT 39040 Query 249130 GGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAAT 249189 || || ||| | | | | ||| |||| | || || ||||| || || || Sbjct 39039 GGCATTGGTTTGAACATTCACTGCATTCGAGGTACTGGCTCCTACATTGCCGGCACCAAC 38980 Query 249190 GGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATC 249249 || ||||| | |||||||| ||| | ||||| ||| | ||||||| | | | || Sbjct 38979 GGTGTCAGCAACGGTATCGTTCCCATGCTTCGTGTCTTCAACAACACCGCCCGTTACGTC 38920 Query 249250 AACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCC 249306 |||||| || | || || | || ||||| || | || |||||| | Sbjct 38919 GACCAGGGTGGTAACAAGCGTCCCGGTGCCTTTGCCATCTACATTGAGCCTTGGCACTCG 38860 Query 249307 GATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGT 249366 ||| | || |||||||| |||||| |||||| |||| || || | | || ||| Sbjct 38859 GATGTCTTTGAGTTCCTCGACTTGCGCAAGAACCACGGTAAGGAAGAAGTTCGTGCCCGT 38800 Query 249367 GACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATG 249405 || |||||||||| || ||||| |||| | |||||| Sbjct 38799 GAACTCTTCTACGCTCTCTGGGTTCCCGATCTCTTCATG 38761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073578456989248